This repository keeps a collect of workflows for ARGO variant calling. All workflows use tools defined and released in multiple repositories: https://github.com/icgc-argo/dna-seq-processing-tools, https://github.com/icgc-argo/data-processing-utility-tools and https://github.com/icgc-argo/gatk-tools. Every tool (including associated container image registered in Quay.io) is strictly version controlled to ensure reproducibility of the tools themselves and workflows composed from them.
This repository has been archived by the owner on May 14, 2020. It is now read-only.
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icgc-argo/variant-calling-wfs
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