Build and Test MOOSE Errors on Linux Ubuntu 22.04 Machine #26876

kurtenkera · 2024-02-23T03:56:13Z

kurtenkera
Feb 23, 2024

I've previously been using MOOSE last week and earlier this week; however, my Linux laptop had to be re-imaged/wiped yesterday. I've just re-installed Anaconda and also I'm re-going through the MOOSE installation steps. I've cloned MOOSE successfully using the following:

mkdir -p ~/projects_MOOSE
cd ~/projects_MOOSE
git clone https://github.com/idaholab/moose.git
cd moose
git checkout master

But when I tried the following:

cd ~/projects_MOOSE/moose/test
make -j 6

I got the following error message:

Compiling C++ (in opt mode) /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C...
In file included from /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C:19:
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C: In member function 'bool MooseServer::addParametersToList(wasp::DataArray&, const InputParameters&, const std::set<std::__cxx11::basic_string<char> >&, int, int, int, int, const string&)':
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:529:9: error: 'client_snippet_support' was not declared in this scope
  529 |     if (client_snippet_support && !default_value.empty())
      |         ^~~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:531:32: error: 'm_text_format_snippet' is not a member of 'wasp::lsp'
  531 |       text_format = wasp::lsp::m_text_format_snippet;
      |                                ^~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:536:32: error: 'm_text_format_plaintext' is not a member of 'wasp::lsp'
  536 |       text_format = wasp::lsp::m_text_format_plaintext;
      |                                ^~~~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:557:57: error: too many arguments to function 'bool wasp::lsp::buildCompletionObject(wasp::DataObject&, std::ostream&, const string&, int, int, int, int, const string&, int, const string&, const string&, bool, bool)'
  557 |                                              text_format);
      |                                                         ^
In file included from /home/enk001/projects_MOOSE/moose/framework/build/header_symlinks/MooseServer.h:13,
                 from /home/enk001/projects_MOOSE/moose/framework/src/base/MooseApp.C:53,
                 from /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C:12:
/home/enk001/anaconda3/envs/moose/wasp/include/wasplsp/LSP.h:604:6: note: declared here
  604 | bool buildCompletionObject( DataObject        & object          ,
      |      ^~~~~~~~~~~~~~~~~~~~~
In file included from /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C:19:
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C: In member function 'bool MooseServer::addSubblocksToList(wasp::DataArray&, const string&, int, int, int, int, const string&, bool)':
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:618:25: error: 'client_snippet_support' was not declared in this scope
  618 |       int text_format = client_snippet_support ? wasp::lsp::m_text_format_snippet
      |                         ^~~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:618:61: error: 'm_text_format_snippet' is not a member of 'wasp::lsp'
  618 |       int text_format = client_snippet_support ? wasp::lsp::m_text_format_snippet
      |                                                             ^~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:619:61: error: 'm_text_format_plaintext' is not a member of 'wasp::lsp'
  619 |                                                : wasp::lsp::m_text_format_plaintext;
      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:654:59: error: too many arguments to function 'bool wasp::lsp::buildCompletionObject(wasp::DataObject&, std::ostream&, const string&, int, int, int, int, const string&, int, const string&, const string&, bool, bool)'
  654 |                                                text_format);
      |                                                           ^
In file included from /home/enk001/projects_MOOSE/moose/framework/build/header_symlinks/MooseServer.h:13,
                 from /home/enk001/projects_MOOSE/moose/framework/src/base/MooseApp.C:53,
                 from /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C:12:
/home/enk001/anaconda3/envs/moose/wasp/include/wasplsp/LSP.h:604:6: note: declared here
  604 | bool buildCompletionObject( DataObject        & object          ,
      |      ^~~~~~~~~~~~~~~~~~~~~
In file included from /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C:19:
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C: In member function 'bool MooseServer::addValuesToList(wasp::DataArray&, const InputParameters&, const std::set<std::__cxx11::basic_string<char> >&, const string&, const std::set<std::__cxx11::basic_string<char> >&, int, int, int, int)':
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:791:9: error: 'client_snippet_support' was not declared in this scope
  791 |     if (client_snippet_support)
      |         ^~~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:793:32: error: 'm_text_format_snippet' is not a member of 'wasp::lsp'
  793 |       text_format = wasp::lsp::m_text_format_snippet;
      |                                ^~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:798:32: error: 'm_text_format_plaintext' is not a member of 'wasp::lsp'
  798 |       text_format = wasp::lsp::m_text_format_plaintext;
      |                                ^~~~~~~~~~~~~~~~~~~~~~~
/home/enk001/projects_MOOSE/moose/framework/src/base/MooseServer.C:818:57: error: too many arguments to function 'bool wasp::lsp::buildCompletionObject(wasp::DataObject&, std::ostream&, const string&, int, int, int, int, const string&, int, const string&, const string&, bool, bool)'
  818 |                                              text_format);
      |                                                         ^
In file included from /home/enk001/projects_MOOSE/moose/framework/build/header_symlinks/MooseServer.h:13,
                 from /home/enk001/projects_MOOSE/moose/framework/src/base/MooseApp.C:53,
                 from /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.C:12:
/home/enk001/anaconda3/envs/moose/wasp/include/wasplsp/LSP.h:604:6: note: declared here
  604 | bool buildCompletionObject( DataObject        & object          ,
      |      ^~~~~~~~~~~~~~~~~~~~~
make: *** [/home/enk001/projects_MOOSE/moose/framework/build.mk:151: /home/enk001/projects_MOOSE/moose/framework/build/unity_src/base_Unity.x86_64-conda-linux-gnu.opt.lo] Error 1

I don't even know where to start here. I've attached the list of installed packages in my MOOSE conda environment below. Can anyone please help as I need MOOSE to work desperately!

# packages in environment at /home/enk001/anaconda3/envs/moose:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
_sysroot_linux-64_curr_repodata_hack 3                   h69a702a_13    conda-forge
alsa-lib                  1.2.8                h166bdaf_0    conda-forge
aom                       3.5.0                h27087fc_0    conda-forge
astroid                   3.0.3           py310hff52083_0    conda-forge
atk-1.0                   2.38.0               hd4edc92_1    conda-forge
attr                      2.5.1                h166bdaf_1    conda-forge
autoconf                  2.71            pl5321h2b4cb7a_1    conda-forge
automake                  1.16.5          pl5321ha770c72_0    conda-forge
beautifulsoup4            4.12.3             pyha770c72_0    conda-forge
binutils_impl_linux-64    2.39                 he00db2b_1    conda-forge
binutils_linux-64         2.39                h5fc0e48_13    conda-forge
bison                     3.4                  h58526e2_1    conda-forge
brotli                    1.1.0                hd590300_1    conda-forge
brotli-bin                1.1.0                hd590300_1    conda-forge
bzip2                     1.0.8                hd590300_5    conda-forge
c-ares                    1.23.0               hd590300_0    conda-forge
ca-certificates           2023.11.17           hbcca054_0    conda-forge
cairo                     1.16.0            ha61ee94_1014    conda-forge
certifi                   2024.2.2           pyhd8ed1ab_0    conda-forge
clang                     12.0.1               ha770c72_0    conda-forge
clang-12                  12.0.1          default_ha53f305_0    conda-forge
clang-format              14.0.6          default_h7634d5b_1    conda-forge
clang-format-14           14.0.6          default_h7634d5b_1    conda-forge
clang-tools               12.0.1          default_ha53f305_0    conda-forge
clangxx                   12.0.1          default_ha53f305_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
cloudpickle               3.0.0              pyhd8ed1ab_0    conda-forge
cmake                     3.25.1               h816a3e0_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
contourpy                 1.2.0           py310hd41b1e2_0    conda-forge
curl                      7.86.0               h7bff187_1    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
cytoolz                   0.12.3          py310h2372a71_0    conda-forge
dask-core                 2024.2.0           pyhd8ed1ab_0    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
deepdiff                  6.7.1              pyhd8ed1ab_0    conda-forge
dill                      0.3.8              pyhd8ed1ab_0    conda-forge
double-conversion         3.2.0                h27087fc_1    conda-forge
eigen                     3.4.0                h00ab1b0_0    conda-forge
elfutils                  0.188                hde5d1a3_1    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
ffmpeg                    4.4.2           gpl_h8dda1f0_112    conda-forge
fftw                      3.3.10          nompi_hc118613_108    conda-forge
flex                      2.6.4             h58526e2_1004    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_1    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.49.0          py310h2372a71_0    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
fsspec                    2024.2.0           pyhca7485f_0    conda-forge
gcc_impl_linux-64         10.4.0              h5231bdf_19    conda-forge
gcc_linux-64              10.4.0              h9215b83_13    conda-forge
gdk-pixbuf                2.42.10              h5eee18b_0  
gettext                   0.21.1               h27087fc_0    conda-forge
gfortran_impl_linux-64    10.4.0              h7d168d2_19    conda-forge
gfortran_linux-64         10.4.0              h69d5af5_13    conda-forge
giflib                    5.2.1                h0b41bf4_3    conda-forge
git-lfs                   3.4.1                ha770c72_0    conda-forge
gitdb                     4.0.11             pyhd8ed1ab_0    conda-forge
gitpython                 3.1.42             pyhd8ed1ab_0    conda-forge
gl2ps                     1.4.2                h0708190_0    conda-forge
glew                      2.1.0                h9c3ff4c_2    conda-forge
glib                      2.78.4               hfc55251_0    conda-forge
glib-tools                2.78.4               hfc55251_0    conda-forge
gmp                       6.3.0                h59595ed_0    conda-forge
gmpy2                     2.1.2           py310h3ec546c_1    conda-forge
gnutls                    3.7.9                hb077bed_0    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
graphviz                  8.0.3                h2e5815a_0    conda-forge
gst-plugins-base          1.21.3               h4243ec0_1    conda-forge
gstreamer                 1.21.3               h25f0c4b_1    conda-forge
gstreamer-orc             0.4.37               hd590300_0    conda-forge
gtk2                      2.24.33              h90689f9_2    conda-forge
gts                       0.7.6                h977cf35_4    conda-forge
gxx_impl_linux-64         10.4.0              h5231bdf_19    conda-forge
gxx_linux-64              10.4.0              h6e491c6_13    conda-forge
harfbuzz                  6.0.0                h8e241bc_0    conda-forge
hdf4                      4.2.15               h9772cbc_5    conda-forge
hdf5                      1.12.1          mpi_mpich_h08b82f9_4    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
imagecodecs-lite          2019.12.3       py310h1f7b6fc_7    conda-forge
imageio                   2.34.0             pyh4b66e23_0    conda-forge
importlib-metadata        7.0.1              pyha770c72_0    conda-forge
importlib_metadata        7.0.1                hd8ed1ab_0    conda-forge
isort                     5.13.2             pyhd8ed1ab_0    conda-forge
jack                      1.9.22               h11f4161_0    conda-forge
jinja2                    3.1.3              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
jsoncpp                   1.9.5                h4bd325d_1    conda-forge
kernel-headers_linux-64   3.10.0              h4a8ded7_13    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.5           py310hd41b1e2_1    conda-forge
krb5                      1.19.3               h3790be6_0    conda-forge
lame                      3.100             h166bdaf_1003    conda-forge
latexcodec                2.0.1              pyh9f0ad1d_0    conda-forge
lazy_loader               0.3                pyhd8ed1ab_0    conda-forge
lcms2                     2.14                 h6ed2654_0    conda-forge
ld_impl_linux-64          2.39                 hcc3a1bd_1    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libarchive                3.6.2                hc8874e4_0    conda-forge
libblas                   3.9.0           21_linux64_openblas    conda-forge
libbrotlicommon           1.1.0                hd590300_1    conda-forge
libbrotlidec              1.1.0                hd590300_1    conda-forge
libbrotlienc              1.1.0                hd590300_1    conda-forge
libcap                    2.66                 ha37c62d_0    conda-forge
libcblas                  3.9.0           21_linux64_openblas    conda-forge
libclang                  15.0.7          default_hb11cfb5_4    conda-forge
libclang-cpp12            12.0.1          default_ha53f305_4    conda-forge
libclang-cpp14            14.0.6          default_h7634d5b_1    conda-forge
libclang13                15.0.7          default_ha2b6cf4_4    conda-forge
libcups                   2.3.3                h3e49a29_2    conda-forge
libcurl                   7.86.0               h7bff187_1    conda-forge
libdb                     6.2.32               h9c3ff4c_0    conda-forge
libdeflate                1.14                 h166bdaf_0    conda-forge
libdrm                    2.4.114              h166bdaf_0    conda-forge
libdrm-cos7-x86_64        2.4.97            h9b0a68f_1105    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               h9b69904_4    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libflac                   1.4.3                h59595ed_0    conda-forge
libgcc-devel_linux-64     10.4.0              hd38fd1e_19    conda-forge
libgcc-ng                 13.2.0               h807b86a_3    conda-forge
libgcrypt                 1.10.3               hd590300_0    conda-forge
libgd                     2.3.3                h18fbbfe_3    conda-forge
libgfortran-ng            13.1.0               h69a702a_0    conda-forge
libgfortran5              13.1.0               h15d22d2_0    conda-forge
libglib                   2.78.4               h783c2da_0    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libglvnd-cos7-x86_64      1.0.1             h9b0a68f_1105    conda-forge
libglvnd-glx-cos7-x86_64  1.0.1             h9b0a68f_1105    conda-forge
libgomp                   13.2.0               h807b86a_3    conda-forge
libgpg-error              1.47                 h71f35ed_0    conda-forge
libhwloc                  2.9.1                hd6dc26d_0    conda-forge
libice-cos7-x86_64        1.0.9             h9b0a68f_1105    conda-forge
libice-devel-cos7-x86_64  1.0.9             h9b0a68f_1105    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libidn2                   2.3.4                h166bdaf_0    conda-forge
liblapack                 3.9.0           21_linux64_openblas    conda-forge
libllvm12                 12.0.1               hf817b99_2    conda-forge
libllvm14                 14.0.6               hcd5def8_4    conda-forge
libllvm15                 15.0.7               hadd5161_1    conda-forge
libmicrohttpd             0.9.77               h97afed2_0    conda-forge
libnetcdf                 4.8.1           mpi_mpich_hcdf9059_2    conda-forge
libnghttp2                1.51.0               hdcd2b5c_0    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.26          pthreads_h413a1c8_0    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpciaccess              0.17                 h166bdaf_0    conda-forge
libpng                    1.6.42               h2797004_0    conda-forge
libpq                     15.1                 hf695f80_1    conda-forge
librsvg                   2.54.4               h7abd40a_0    conda-forge
libsanitizer              10.4.0              h5246dfb_19    conda-forge
libsm-cos7-x86_64         1.2.2             h9b0a68f_1105    conda-forge
libsm-devel-cos7-x86_64   1.2.2             h9b0a68f_1105    conda-forge
libsndfile                1.2.2                hc60ed4a_1    conda-forge
libsqlite                 3.44.2               h2797004_0    conda-forge
libssh2                   1.10.0               haa6b8db_3    conda-forge
libstdcxx-devel_linux-64  10.4.0              hd38fd1e_19    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_3    conda-forge
libsystemd0               252                  h2a991cd_0    conda-forge
libtasn1                  4.19.0               h166bdaf_0    conda-forge
libtheora                 1.1.1             h7f98852_1005    conda-forge
libtiff                   4.4.0                h82bc61c_5    conda-forge
libtool                   2.4.7                h27087fc_0    conda-forge
libudev1                  253                  h0b41bf4_0    conda-forge
libunistring              0.9.10               h7f98852_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libuv                     1.46.0               hd590300_0    conda-forge
libva                     2.18.0               h0b41bf4_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libvpx                    1.11.0               h9c3ff4c_3    conda-forge
libwebp                   1.3.2                h11a3e52_0  
libwebp-base              1.3.2                hd590300_0    conda-forge
libx11-common-cos7-x86_64 1.6.7             h9b0a68f_1105    conda-forge
libx11-cos7-x86_64        1.6.7             h9b0a68f_1105    conda-forge
libx11-devel-cos7-x86_64  1.6.7             h9b0a68f_1105    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxext-cos7-x86_64       1.3.3             h9b0a68f_1105    conda-forge
libxext-devel-cos7-x86_64 1.3.3             h9b0a68f_1105    conda-forge
libxkbcommon              1.5.0                h79f4944_1    conda-forge
libxml2                   2.10.3               hca2bb57_4    conda-forge
libxslt                   1.1.37               h873f0b0_0    conda-forge
libxt-cos7-x86_64         1.1.5             h9b0a68f_1105    conda-forge
libxt-devel-cos7-x86_64   1.1.5             h9b0a68f_1105    conda-forge
libzip                    1.9.2                hc869a4a_1    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
livereload                2.6.3              pyh9f0ad1d_0    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
loguru                    0.7.2           py310hff52083_1    conda-forge
lxml                      4.9.2           py310hbdc0903_0    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
m4                        1.4.18            h516909a_1001    conda-forge
make                      4.3                  hd18ef5c_1    conda-forge
mako                      1.3.2              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.5           py310h2372a71_0    conda-forge
matplotlib                3.8.3           py310hff52083_0    conda-forge
matplotlib-base           3.8.3           py310h62c0568_0    conda-forge
mccabe                    0.7.0              pyhd8ed1ab_0    conda-forge
mesa-khr-devel-cos7-x86_64 18.3.4            h9b0a68f_1105    conda-forge
mesa-libgl-cos7-x86_64    18.3.4            h9b0a68f_1105    conda-forge
mesa-libgl-devel-cos7-x86_64 18.3.4            h9b0a68f_1105    conda-forge
mesa-libglapi-cos7-x86_64 18.3.4            h9b0a68f_1105    conda-forge
mesalib                   23.0.0               h0fe20ba_0    conda-forge
mock                      5.1.0              pyhd8ed1ab_0    conda-forge
moose-dev                 2024.01.23              build_0    https://conda.software.inl.gov/public
moose-libmesh             2024.01.23              build_0    https://conda.software.inl.gov/public
moose-libmesh-vtk         9.2.6                   build_8    https://conda.software.inl.gov/public
moose-mpich               4.0.2                  build_15    https://conda.software.inl.gov/public
moose-peacock             2023.11.29           h1bca318_0    https://conda.software.inl.gov/public
moose-petsc               3.20.3                  build_0    https://conda.software.inl.gov/public
moose-tools               2023.12.20           h55675f2_0    https://conda.software.inl.gov/public
moose-wasp                2023.11.29              build_0    https://conda.software.inl.gov/public
mpc                       1.3.1                hfe3b2da_0    conda-forge
mpfr                      4.2.1                h9458935_0    conda-forge
mpg123                    1.32.4               h59595ed_0    conda-forge
mpi                       1.0                       mpich    conda-forge
mpich                     4.0.2              h846660c_100    conda-forge
mpich-mpicc               4.0.2              hb600da9_100    conda-forge
mpich-mpicxx              4.0.2              h166bdaf_100    conda-forge
mpich-mpifort             4.0.2              h924138e_100    conda-forge
mpmath                    1.3.0              pyhd8ed1ab_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.32               h14678bc_0    conda-forge
mysql-libs                8.0.32               h54cf53e_0    conda-forge
ncurses                   6.4                  h59595ed_2    conda-forge
nettle                    3.9.1                h7ab15ed_0    conda-forge
networkx                  3.2.1              pyhd8ed1ab_0    conda-forge
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.97                 h1d7d5a4_0    conda-forge
numpy                     1.26.4          py310hb13e2d6_0    conda-forge
openh264                  2.3.1                hcb278e6_2    conda-forge
openjpeg                  2.5.0                h7d73246_1    conda-forge
openssl                   1.1.1w               hd590300_0    conda-forge
ordered-set               4.1.0              pyhd8ed1ab_0    conda-forge
orjson                    3.9.10          py310h1e2579a_0    conda-forge
p11-kit                   0.24.1               hc5aa10d_0    conda-forge
packaging                 23.2               pyhd8ed1ab_0    conda-forge
pandas                    2.2.0           py310hcc13569_0    conda-forge
pango                     1.50.14              hd33c08f_0    conda-forge
partd                     1.4.1              pyhd8ed1ab_0    conda-forge
pcre2                     10.42                hcad00b1_0    conda-forge
perl                      5.32.1          4_hd590300_perl5    conda-forge
pillow                    9.2.0           py310h454ad03_3    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pixman                    0.43.2               h59595ed_0    conda-forge
pkg-config                0.29.2            h36c2ea0_1008    conda-forge
platformdirs              4.2.0              pyhd8ed1ab_0    conda-forge
ply                       3.11                       py_1    conda-forge
proj                      9.0.1                h93bde94_1    conda-forge
psycopg2                  2.9.3           py310h416cc33_2    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
pugixml                   1.11.4               h59595ed_1    conda-forge
pulseaudio                16.1                 h4ab2085_1    conda-forge
pyaml                     23.12.0            pyhd8ed1ab_0    conda-forge
pybtex                    0.24.0             pyhd8ed1ab_2    conda-forge
pycobertura               3.3.1              pyhd8ed1ab_0    conda-forge
pyflakes                  3.2.0              pyhd8ed1ab_0    conda-forge
pylatexenc                2.10               pyhd8ed1ab_0    conda-forge
pylint                    3.0.3              pyhd8ed1ab_0    conda-forge
pyparsing                 3.1.1              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.7          py310hab646b1_3    conda-forge
pyqt5-sip                 12.11.0         py310heca2aa9_3    conda-forge
python                    3.10.8          h257c98d_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-tzdata             2024.1             pyhd8ed1ab_0    conda-forge
python_abi                3.10                    4_cp310    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pywavelets                1.4.1           py310h1f7b6fc_1    conda-forge
pyyaml                    6.0.1           py310h2372a71_1    conda-forge
qt-main                   5.15.6               h25460bb_4    conda-forge
readline                  8.2                  h8228510_1    conda-forge
rhash                     1.4.3                hd590300_2    conda-forge
ruamel.yaml               0.18.6          py310h2372a71_0    conda-forge
ruamel.yaml.clib          0.2.8           py310h2372a71_0    conda-forge
scikit-image              0.20.0          py310h9b08913_1    conda-forge
scipy                     1.12.0          py310hb13e2d6_2    conda-forge
setuptools                59.8.0          py310hff52083_1    conda-forge
sip                       6.7.12          py310hc6cd4ac_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
smmap                     5.0.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
sqlite                    3.44.2               h2c6b66d_0    conda-forge
svt-av1                   1.4.1                hcb278e6_0    conda-forge
sympy                     1.12            pypyh9d50eac_103    conda-forge
sysroot_linux-64          2.17                h4a8ded7_13    conda-forge
tabulate                  0.9.0              pyhd8ed1ab_1    conda-forge
tbb                       2021.9.0             hf52228f_0    conda-forge
tbb-devel                 2021.9.0             hf52228f_0    conda-forge
tifffile                  2020.6.3                   py_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.12.3             pyha770c72_0    conda-forge
toolz                     0.12.1             pyhd8ed1ab_0    conda-forge
tornado                   6.4             py310h2372a71_0    conda-forge
typing-extensions         4.9.0                hd8ed1ab_0    conda-forge
typing_extensions         4.9.0              pyha770c72_0    conda-forge
tzdata                    2024a                h0c530f3_0    conda-forge
unicodedata2              15.1.0          py310h2372a71_0    conda-forge
utfcpp                    4.0.5                ha770c72_0    conda-forge
vtk                       9.1.0           qt_py310hb71b3df_211    conda-forge
wheel                     0.42.0             pyhd8ed1ab_0    conda-forge
x264                      1!164.3095           h166bdaf_2    conda-forge
x265                      3.5                  h924138e_3    conda-forge
xcb-util                  0.4.0                h516909a_0    conda-forge
xcb-util-image            0.4.0                h166bdaf_0    conda-forge
xcb-util-keysyms          0.4.0                h516909a_0    conda-forge
xcb-util-renderutil       0.3.9                h166bdaf_0    conda-forge
xcb-util-wm               0.4.1                h516909a_0    conda-forge
xkeyboard-config          2.38                 h0b41bf4_0    conda-forge
xmltodict                 0.13.0             pyhd8ed1ab_0    conda-forge
xorg-damageproto          1.2.1             h7f98852_1002    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-glproto              1.4.17            h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.8.4                h0b41bf4_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdamage           1.1.5                h7f98852_1    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxrandr            1.5.2                h7f98852_1    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-libxt                1.3.0                hd590300_0    conda-forge
xorg-randrproto           1.5.0             h7f98852_1001    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-util-macros          1.19.3               h7f98852_0    conda-forge
xorg-x11-proto-devel-cos7-x86_64 2018.4            h9b0a68f_1105    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xf86vidmodeproto     2.3.1             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zfp                       0.5.5                h9c3ff4c_8    conda-forge
zipp                      3.17.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstd                      1.5.5

Answered by GiudGiud

Feb 23, 2024

conda list should return these packages

# packages in environment at /Users/giudgl/mambaforge3/envs/moose:
moose-libmesh             2024.01.23              build_0    https://conda.software.inl.gov/public
moose-libmesh-vtk         9.2.6                   build_8    https://conda.software.inl.gov/public
moose-mpich               4.0.2                  build_15    https://conda.software.inl.gov/public
moose-petsc               3.20.3                  build_0    https://conda.software.inl.gov/public
moose-test-tools          2023.08.31      py310h39238f2_0    https://conda.software.inl.gov/public
moose-tools               2023.08.31      py310hd8e275d_0    https://conda.software.inl.gov/pub…

View full answer

GiudGiud · 2024-02-23T06:54:42Z

GiudGiud
Feb 23, 2024
Collaborator

Hello

This is an out of date wasp
you just need to update the dependencies with conda update --all

9 replies

jackeggemeyer Feb 23, 2024

when I was installing moose/conda on a fresh OS the conda update --all command didn't update conda to the most recent version so you may have to do it twice

GiudGiud Feb 23, 2024
Collaborator

conda list should return these packages

# packages in environment at /Users/giudgl/mambaforge3/envs/moose:
moose-libmesh             2024.01.23              build_0    https://conda.software.inl.gov/public
moose-libmesh-vtk         9.2.6                   build_8    https://conda.software.inl.gov/public
moose-mpich               4.0.2                  build_15    https://conda.software.inl.gov/public
moose-petsc               3.20.3                  build_0    https://conda.software.inl.gov/public
moose-test-tools          2023.08.31      py310h39238f2_0    https://conda.software.inl.gov/public
moose-tools               2023.08.31      py310hd8e275d_0    https://conda.software.inl.gov/public
moose-wasp                2024.02.19              build_0    https://conda.software.inl.gov/public

if it does not and conda update does not succeed, delete the moose conda environment and re-install it from fresh

Answer selected by kurtenkera

selarem Feb 26, 2024

I am guetting the same error; nothing could solve it ! starting from clean distribution 3 times today!

jackeggemeyer Feb 26, 2024

I had the same issue on 02/23 and I think moose or conda was being updated so the versions werent compatable or something, try a fresh install of conda. Thats what worked for me

GiudGiud Feb 26, 2024
Collaborator

fresh install of conda + updated moose should always work.

selarem Feb 26, 2024

Not working for the 6th install of conda (miniconda and anaconda3) + fresh moose.
may be I should buy a new computer !

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Build and Test MOOSE Errors on Linux Ubuntu 22.04 Machine #26876

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Build and Test MOOSE Errors on Linux Ubuntu 22.04 Machine #26876

kurtenkera Feb 23, 2024

Replies: 1 comment · 9 replies

GiudGiud Feb 23, 2024 Collaborator

jackeggemeyer Feb 23, 2024

GiudGiud Feb 23, 2024 Collaborator

selarem Feb 26, 2024

jackeggemeyer Feb 26, 2024

GiudGiud Feb 26, 2024 Collaborator

selarem Feb 26, 2024

kurtenkera
Feb 23, 2024

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GiudGiud
Feb 23, 2024
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GiudGiud Feb 23, 2024
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GiudGiud Feb 26, 2024
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