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Combined remove smt, update numpy, and unpin cloudpickle #2365

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joshua-cogliati-inl
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@joshua-cogliati-inl joshua-cogliati-inl commented Sep 10, 2024


Pull Request Description

What issue does this change request address?

Issue #2355
Issue #2294

What are the significant changes in functionality due to this change request?

The SMT library is currently not functioning on macOS. However, we only require it for a specific function that can be utilized through the pyDOE3 library
This updates to Numpy 1.24
This removes the pinning to cloudpickle 2.2
These are combined because they are all needed to pass the regression tests.


For Change Control Board: Change Request Review

The following review must be completed by an authorized member of the Change Control Board.

  • 1. Review all computer code.
  • 2. If any changes occur to the input syntax, there must be an accompanying change to the user manual and xsd schema. If the input syntax change deprecates existing input files, a conversion script needs to be added (see Conversion Scripts).
  • 3. Make sure the Python code and commenting standards are respected (camelBack, etc.) - See on the wiki for details.
  • 4. Automated Tests should pass, including run_tests, pylint, manual building and xsd tests. If there are changes to Simulation.py or JobHandler.py the qsub tests must pass.
  • 5. If significant functionality is added, there must be tests added to check this. Tests should cover all possible options. Multiple short tests are preferred over one large test. If new development on the internal JobHandler parallel system is performed, a cluster test must be added setting, in XML block, the node <internalParallel> to True.
  • 6. If the change modifies or adds a requirement or a requirement based test case, the Change Control Board's Chair or designee also needs to approve the change. The requirements and the requirements test shall be in sync.
  • 7. The merge request must reference an issue. If the issue is closed, the issue close checklist shall be done.
  • 8. If an analytic test is changed/added is the the analytic documentation updated/added?
  • 9. If any test used as a basis for documentation examples (currently found in raven/tests/framework/user_guide and raven/docs/workshop) have been changed, the associated documentation must be reviewed and assured the text matches the example.

@joshua-cogliati-inl
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This is identical to #2363 except related commits have been squashed together.

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@wangcj05 wangcj05 left a comment

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One suggest for consider.

Comment on lines +195 to +196
initSamples = lhs(limits.shape[0], samples=nSamples, criterion='cm', random_state=42)
initSamples = limits[:,0] + (limits[:,1] - limits[:,0]) * initSamples
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I suggest to make a util function for these lines since they appears multiple times and in different modules.

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We can fix that in new PR; as there are too many things going on here.

@moosebuild
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Job Mingw Test on e5e417f : invalidated by @joshua-cogliati-inl

failed in set python environment with segfault

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@moosebuild
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Job Mingw Test on e5e417f : invalidated by @joshua-cogliati-inl

failed in set python environment with segfault

@moosebuild
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Job Test qsubs sawtooth on e5e417f : invalidated by @joshua-cogliati-inl

Diff tests/cluster_tests/test_mpiqsub_nosplit

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@PaulTalbot-INL PaulTalbot-INL left a comment

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Reviewed code changes, no outstanding concerns.

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Checklists pass. Merging.

@PaulTalbot-INL PaulTalbot-INL merged commit b93ebb4 into idaholab:devel Sep 10, 2024
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@joshua-cogliati-inl joshua-cogliati-inl deleted the combined_smt_numpy_cloudpickle_rebase branch September 16, 2024 15:53
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[DEFECT] Version conflict with cloud pickle [UNDER-DISCUSSION] SMT vs. PyDOE
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