Skip to content
@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

Pinned Loading

  1. DCell DCell Public

    DCell browser and gene deletion simulator

    JavaScript 122 34

  2. hiview hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 32 19

  5. pyNBS pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 38 22

Repositories

Showing 10 of 176 repositories
  • networkx_cyweb_analyzer Public
    idekerlab/networkx_cyweb_analyzer’s past year of commit activity
    Python 0 0 0 0 Updated Jan 17, 2025
  • test_cyweb_service_app Public
    idekerlab/test_cyweb_service_app’s past year of commit activity
    Python 1 0 0 0 Updated Jan 17, 2025
  • network-viewer Public
    idekerlab/network-viewer’s past year of commit activity
    TypeScript 1 1 0 8 Updated Jan 16, 2025
  • G2PT Public
    idekerlab/G2PT’s past year of commit activity
    Python 8 2 1 0 Updated Jan 16, 2025
  • cansrmapp Public
    idekerlab/cansrmapp’s past year of commit activity
    Python 0 0 0 0 Updated Jan 13, 2025
  • cookiecutter-musicpypackage Public
    idekerlab/cookiecutter-musicpypackage’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 6, 2025
  • cellmaps_utils Public
    idekerlab/cellmaps_utils’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Jan 6, 2025
  • cellmaps_generate_hierarchy Public
    idekerlab/cellmaps_generate_hierarchy’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 6, 2025
  • cellmaps_hierarchyeval Public

    Code for hierarchy evaluation

    idekerlab/cellmaps_hierarchyeval’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 6, 2025
  • cellmaps_imagedownloader Public
    idekerlab/cellmaps_imagedownloader’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Jan 6, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…