cxmate.json

{
  "general": {
    "location": "0.0.0.0:80",
    "logger": {
      "debug": true
    }
  },
  "service": {
    "location": "diffusion:8080",
    "title": "Heat Diffusion",
    "version": "3.0.0",
    "author": "Daniel Carlin",
    "email": "dcarlin@ucsd.edu",
    "description": "Accepts a network with node heats, and propogates the heat along edges to create a new heat layout",
    "website": "http://apps.cytoscape.org/apps/diffusion",
    "repository": "http://github.com/idekerlab/heat-diffusion",
    "license": "MIT",
    "language": "Python",
    "singletonInput": true,
    "parameters": [
      {
        "name": "time",
        "default": "0.1",
        "description": "The upper bound on the exponential multiplication performed by diffusion",
        "type": "number"

      },
      {
        "name": "normalize_laplacian",
        "default": "False",
        "description": "If True, will create a normalized laplacian matrix for diffusion",
        "type": "boolean"
      },
      {
        "name": "input_attribute_name",
        "default": "diffusion_input",
        "description": "The key diffusion will use to search for heats in the node attributes with"
      },
      {
        "name": "output_attribute_name",
        "default": "diffusion_output",
        "description": "Will be the prefix of the _rank and _heat attriubtes created by diffusion"
      }
    ],
    "input": [
      {
        "label": "Input",
        "description": "An input network with heat values attached to nodes",
        "aspects": ["nodes", "edges", "nodeAttributes"]
      }
    ],
    "singletonOutput": true,
    "output": [
      {
        "label": "Output",
        "description": "An output network with new heats and a rank attribute created by diffusion",
        "aspects": ["nodes", "edges", "nodeAttributes"]
      }
    ]
  }
}