clean up

igvteam · Aug 6, 2024 · 8f67e1b · 8f67e1b
1 parent 7abefb0
commit 8f67e1b
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Showing 3 changed files with 320 additions and 318 deletions.
diff --git a/dev/issues/blocking-load.html b/dev/issues/blocking-load.html
@@ -8,84 +8,74 @@
     <meta name="author" content="">
     <link rel="shortcut icon" href="https://igv.org/web/https://igv.org/web/img/favicon.ico">
     <title>await demo</title>
-    <script src="https://code.jquery.com/jquery-3.4.0.min.js"></script>
 </head>
 <body>
 <div id="controlDiv" style="border: 1px solid red; padding: 20px;">
-    <button id="loadButton" style="font-size: 24px" >Add Track, list names</button>
+    <button id="loadButton" style="font-size: 24px">Add Track, list names</button>
 </div>
 <div id="igvDiv" style="padding-top: 50px;padding-bottom: 20px; height: auto"></div>
 
-
 <script type="module">
-
-    import igv from "../../js";
-    $(document).ready(async () => {
-        console.log("ready")
-        window.igvBrowser = await igv.createBrowser(document.getElementById('igvDiv'), { genome: "hg19", locus: "chr8:128,306,385-129,129,504" })
+    import igv from "../../js/index.js"; // Assuming this is the correct path
+
+    // Use the DOMContentLoaded event to ensure the DOM is fully loaded
+    document.addEventListener('DOMContentLoaded', async () => {
+        console.log("DOM fully loaded and parsed");
+        window.igvBrowser = await igv.createBrowser(
+            document.getElementById('igvDiv'),
+            { genome: "hg19", locus: "chr8:128,306,385-129,129,504" }
+        );
     });
 
-    document.getElementById('loadButton').onclick = () => {
-
+    document.getElementById('loadButton').addEventListener('click', () => {
         displayAlignmentTrackFromUrl({
-                trackHeight: 500,
-                dataURL: 'https://s3.amazonaws.com/1000genomes/phase3/data/HG00096/exome_alignment/HG00096.mapped.ILLUMINA.bwa.GBR.exome.20120522.bam',
-                indexURL: 'https://s3.amazonaws.com/1000genomes/phase3/data/HG00096/exome_alignment/HG00096.mapped.ILLUMINA.bwa.GBR.exome.20120522.bam.bai',
-                name: 'HG00096_' + Math.random(),
-                visibilityWindow: 1000000,
-                color: 'blue'
-            }
-        )
-        return "doTest returns"
-    }
-
-    function displayAlignmentTrackFromUrl({ trackHeight, dataURL, indexURL, name,  visibilityWindow, color }) {
+            trackHeight: 500,
+            dataURL: 'https://s3.amazonaws.com/1000genomes/phase3/data/HG00096/exome_alignment/HG00096.mapped.ILLUMINA.bwa.GBR.exome.20120522.bam',
+            indexURL: 'https://s3.amazonaws.com/1000genomes/phase3/data/HG00096/exome_alignment/HG00096.mapped.ILLUMINA.bwa.GBR.exome.20120522.bam.bai',
+            name: 'HG00096_' + Math.random(),
+            visibilityWindow: 1000000,
+            color: 'blue'
+        });
+        return "doTest returns";
+    });
 
+    function displayAlignmentTrackFromUrl({ trackHeight, dataURL, indexURL, name, visibilityWindow, color }) {
         console.log("==== bam visibilityWindow: " + visibilityWindow);
         console.log("==== bam height: " + trackHeight);
         console.log("dataURL: " + dataURL);
 
-        const config =
-            {
-                name,
-                type: "alignment",
-                format: "bam",
-                url: dataURL,
-                indexURL,
-                sync: true,
-                order: Number.MAX_VALUE,
-                visibilityWindow,
-                height: trackHeight,
-                color
-            }
+        const config = {
+            name,
+            type: "alignment",
+            format: "bam",
+            url: dataURL,
+            indexURL,
+            sync: true,
+            order: Number.MAX_VALUE,
+            visibilityWindow,
+            height: trackHeight,
+            color
+        };
 
         console.log(JSON.stringify(config));
-
         console.log(" about to call 'await loadTrack(config)'");
 
         (async () => {
-
             try {
-                await window.igvBrowser.loadTrack(config)
+                await window.igvBrowser.loadTrack(config);
             } catch (error) {
-                console.log("=== load bed track error")
-                console.log(error)
-                return
+                console.log("=== load bed track error");
+                console.log(error);
+                return;
             }
 
-            console.log(" 'await loadTrack(config)' returned")
+            console.log(" 'await loadTrack(config)' returned");
 
-            for (let { track } of window.igvBrowser.trackViews) {
-                console.log(track.name)
+            for (const { track } of window.igvBrowser.trackViews) {
+                console.log(track.name);
             }
-
-        })()
+        })();
     }
-
-
 </script>
-
-
 </body>
-
 </html>