illinois-r · coatless · May 22, 2019 · May 23, 2019 · May 23, 2019 · May 23, 2019
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -4,3 +4,6 @@
 ^README-.*\.png$
 ^\.travis\.yml$
 ^cran-comments\.md$
+^inst/rmarkdown/templates/cover_letter$
+^inst/rmarkdown/templates/exam$
+^inst/rmarkdown/templates/uiuc_hw$
diff --git a/.travis.yml b/.travis.yml
@@ -1,3 +1,4 @@
+# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r
+
 language: R
-sudo: false
 cache: packages
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: uiucthemes
 Type: Package
 Title: 'R' 'Markdown' Themes for 'UIUC' Documents and Presentations
-Version: 0.2.1
+Version: 0.2.2
 Authors@R: c(
   person("James", "Balamuta", 
          email = "balamut2@illinois.edu", role = c("aut", "cre"),
@@ -13,7 +13,7 @@ Authors@R: c(
          email = "dalpiaz2@illinois.edu", role = "ctb",
          comment = "Collaborated on the LaTeX Journal Theme"),
   person("Jose Luis", "Rodriguez",
-         email = "jrodriguezorjuela@luc.edu", role = "ctb",
+         email = "jlroo@illinois.edu", role = "ctb",
          comment = "Provided the Market Information Lab (MIL) Beamer Theme")
   )
 Description: A set of custom 'R' 'Markdown' templates for documents and
@@ -25,8 +25,9 @@ Depends:
     R (>= 3.0)
 License: MIT + file LICENSE
 Imports:
-    rmarkdown (>= 1.1.0)
-RoxygenNote: 6.1.0
+    rmarkdown (>= 1.1.0),
+    bookdown
+RoxygenNote: 6.1.1
 Roxygen: list(markdown = TRUE)
 Encoding: UTF-8
 Suggests: knitr

diff --git a/NAMESPACE b/NAMESPACE
@@ -4,4 +4,4 @@ export(beamer_illinois)
 export(beamer_mil)
 export(beamer_orange)
 export(latex_journal_format)
-importFrom(rmarkdown,beamer_presentation)
+export(thesis_pdf_ece)
diff --git a/NEWS.md b/NEWS.md
@@ -1,10 +1,18 @@
+# uiucthemes 0.2.2
+
+## NEW
+
+- Added `thesis_pdf_ece()` template for writing a Master's and PhD thesis in
+  the Department of ECE at UIUC.
+
+
 # uiucthemes 0.2.1
 
 ## NEW
 
 - Added the `beamer_mil()` template for the 
-  [Market Information Lab (MIL)](https://business.illinois.edu/mil/) @ UIUC
-  created by [Jose Luis Rodriguez](https://www.luc.edu/quinlan/faculty/joseluisrodriguezorjuela.shtml)
+  [Market Information Lab (MIL)](https://giesbusiness.illinois.edu/margolis-market-information-lab) @ UIUC
+  created by [Jose Luis Rodriguez](https://giesbusiness.illinois.edu/profile/jose-luis-rodriguez-orjuela)
 - Added a vignette that contains screenshots of each template.
 
 ## CHANGES

diff --git a/R/thesis-templates.R b/R/thesis-templates.R
@@ -0,0 +1,62 @@
+#' Creates an R Markdown PDF Thesis document in the Style of the ECE Department
+#' at UIUC
+#'
+#' Processes the R Markdown file using the appropriate ECE PDF template.
+#'
+#' @param toc_depth Depth shown in table of contents. Must be a positive integer.
+#' @param highlight Syntax highlighting style. Supported styles include:
+#'                  "default", "tango", "pygments", "kate", "monochrome",
+#'                  "espresso", "zenburn", and "haddock". Pass `NULL`
+#'                   to prevent syntax highlighting.
+#' @param ... Additional parameters passed to [bookdown::pdf_book()].
+#'
+#' @return
+#' A modified \code{pdf_document} that uses the ECE Department style at UIUC.
+#'
+#' @references
+#'
+#' - [`thesisdown::thesis_pdf`](https://github.com/ismayc/thesisdown) by Chester Ismay
+#'     - The _R_ function is largely based off of this format.
+#' - [ECE Department Thesis LaTeX Template](https://wiki.illinois.edu/wiki/display/ECEThesisReview/LaTeX+Resources)
+#'     - The `template.tex` uses the shell.
+#'
+#' @export
+#' @examples
+#' \dontrun{
+#'  output: uiucthemes::thesis_pdf_ece
+#' }
+thesis_pdf_ece <- function(toc_depth = 3, highlight = "default", ...){
+
+  base <- bookdown::pdf_book(template = "template.tex",
+                             toc = TRUE,
+                             toc_depth = toc_depth,
+                             highlight = highlight,
+                             keep_tex = TRUE,
+                             pandoc_args = "--top-level-division=chapter",
+                             ...)
+
+  # Mostly copied from knitr::render_sweave
+  base$knitr$opts_chunk$comment <- NA
+  #base$knitr$opts_chunk$fig.align <- "center"
+
+  old_opt <- getOption("bookdown.post.latex")
+  options(bookdown.post.latex = fix_envs)
+  on.exit(options(bookdown.post.late = old_opt))
+
+  base
+
+}
+
+
+fix_envs = function(x){
+  beg_reg <- '^\\s*\\\\begin\\{.*\\}'
+  end_reg <- '^\\s*\\\\end\\{.*\\}'
+  i3 = if (length(i1 <- grep(beg_reg, x))) (i1 - 1)[grepl("^\\s*$", x[i1 - 1])]
+
+  i3 = c(i3,
+         if (length(i2 <- grep(end_reg, x))) (i2 + 1)[grepl("^\\s*$", x[i2 + 1])]
+  )
+  if (length(i3)) x = x[-i3]
+  x
+}
+
diff --git a/R/uiucthemes-package.R b/R/uiucthemes-package.R
@@ -0,0 +1,8 @@
+#' @keywords internal
+"_PACKAGE"
+
+# The following block is used by usethis to automatically manage
+# roxygen namespace tags. Modify with care!
+## usethis namespace: start
+## usethis namespace: end
+NULL
diff --git a/R/uiucthemes.R b/R/uiucthemes.R
diff --git a/README.Rmd b/README.Rmd
@@ -19,10 +19,11 @@ presentations, journal articles, and exam templates.
 
 Included in the package are:
 
-- `beamer_illinois`: Illinois colored header boxes
+- `beamer_illinois`: Illinois colored header boxes.
 - `beamer_orange`: Minimialist slides with a color preference to orange.
-- `beamer_mil`: Beamer Market Information Lab (MIL)
-- `latex_journal_report`: initial implementation of a journal entry for a class.
+- `beamer_mil`: [Market Information Lab (MIL)](https://giesbusiness.illinois.edu/margolis-market-information-lab) Beamer Template.
+- `thesis_pdf_ece`: LaTeX Thesis Template for the [Department of ECE at UIUC](https://wiki.illinois.edu/wiki/display/ECEThesisReview/LaTeX+Resources).
+- `latex_journal_report`: Initial implementation of a journal entry for a class.
 
 Screenshots of each template are included in package overview vignette.
 

diff --git a/README.md b/README.md
@@ -12,11 +12,16 @@ for presentations, journal articles, and exam templates.
 
 Included in the package are:
 
-  - `beamer_illinois`: Illinois colored header boxes
+  - `beamer_illinois`: Illinois colored header boxes.
   - `beamer_orange`: Minimialist slides with a color preference to
     orange.
-  - `beamer_mil`: Beamer Market Information Lab (MIL)
-  - `latex_journal_report`: initial implementation of a journal entry
+  - `beamer_mil`: [Market Information Lab
+    (MIL)](https://giesbusiness.illinois.edu/margolis-market-information-lab)
+    Beamer Template.
+  - `thesis_pdf_ece`: LaTeX Thesis Template for the [Department of ECE
+    at
+    UIUC](https://wiki.illinois.edu/wiki/display/ECEThesisReview/LaTeX+Resources).
+  - `latex_journal_report`: Initial implementation of a journal entry
     for a class.
 
 Screenshots of each template are included in package overview vignette.
@@ -31,8 +36,8 @@ title: '"Illinois" UIUC Beamer Theme'
 short-title: "Beamer Slides"
 author: "John and Mary Doe"
 short-author: "J & M Doe"
-date: 'October 03, 2018'      # Month DD, YYYY (Main Slide)
-short-date: '10/03/2018' # MM/DD/YYYY (Lower Right)
+date: 'May 22, 2019'      # Month DD, YYYY (Main Slide)
+short-date: '05/22/2019' # MM/DD/YYYY (Lower Right)
 institute: "University of Illinois at Urbana-Champaign"
 short-institute: "UIUC"
 department: "Department of Magic"                # Institute must be defined
@@ -134,8 +139,7 @@ install.packages(c("rmarkdown","uiucthemes"))
 install.packages(c("rmarkdown","uiucthemes"))
 ```
 
-3)  Use the `rmarkdown::draft` function to create
-articles:
+3)  Use the `rmarkdown::draft` function to create articles:
 
 <!-- end list -->
 

diff --git a/inst/rmarkdown/templates/thesis_pdf_ece/skeleton/ECE-LaTeX-Guide.pdf b/inst/rmarkdown/templates/thesis_pdf_ece/skeleton/ECE-LaTeX-Guide.pdf