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Namelist updates #13

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Jun 21, 2024
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Namelist updates #13

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2b3737e
generate_textdata: update R, renv & packages
florisvdh Jun 21, 2024
d7f3b3c
generate_textdata: change 'Inundatiemeetnet' to 'Inundatiewatermeetnet'
florisvdh Jun 21, 2024
9a8c3a1
generate_textdata: change 'partim' to language dependent term
florisvdh Jun 21, 2024
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42 changes: 21 additions & 21 deletions inst/textdata/namelist.tsv
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Expand Up @@ -26,14 +26,14 @@ GW_03.3_group2 en types from mesotrophic environments mesotrophic
GW_03.3_group3 en types from weakly eutrophic environments weakly eutrophic
GW_03.3_group4 en types from moderately eutrophic to eutrophic environments (moderately) eutrophic
GW_04.2 en Groundwater monitoring: 4.2 Acidification through groundwater GW: 04.2_acidif_gw
GW_05.1_aq en Groundwater monitoring: 5.1 Desiccation through groundwater: partim aquatic GW: 05.1_des_gw: aq
GW_05.1_aq en Groundwater monitoring: 5.1 Desiccation through groundwater: scheme section aquatic GW: 05.1_des_gw: aq
GW_05.1_aq_group1 en types from spring-fed brooks spring-fed brooks
GW_05.1_aq_group2 en types from lakes with stable groundwater table stable lakes
GW_05.1_aq_group3 en types from lowland rivers lowland rivers
GW_05.1_aq_group4 en types from dune lakes (moderate groundwater dynamics) dune lakes
GW_05.1_aq_group5 en types from softwater lakes with dynamic groundwater table dynamic softwater lakes
GW_05.1_quarries en Groundwater monitoring: 5.1 Desiccation through groundwater: partim marl quarries GW: 05.1_des_gw: quarries
GW_05.1_terr en Groundwater monitoring: 5.1 Desiccation through groundwater: partim terrestrial GW: 05.1_des_gw: terr
GW_05.1_quarries en Groundwater monitoring: 5.1 Desiccation through groundwater: scheme section marl quarries GW: 05.1_des_gw: quarries
GW_05.1_terr en Groundwater monitoring: 5.1 Desiccation through groundwater: scheme section terrestrial GW: 05.1_des_gw: terr
GW_05.1_terr_group1 en types from very wet environments very wet
GW_05.1_terr_group2 en types from wet environments wet
GW_05.1_terr_group3 en types from moderately wet environments moderately wet
Expand Down Expand Up @@ -98,12 +98,12 @@ SOIL_08.2 en Soil monitoring: 8.2 Pollution through soil SOIL: 08.2_poll_soil
SURF en Surfacewater monitoring NA
SURF_012 en Surfacewater monitoring: 12 Soil dynamics increase (erosion, soil turbation, sand drift) SURF: 012_soildyn_incr
SURF_03.2 en Surfacewater monitoring: 3.2 Eutrophication through soil SURF: 03.2_eutr_soil
SURF_03.4_lentic en Surfacewater monitoring: 3.4 Eutrophication through surface water (including inundation): partim lentic waters SURF: 03.4_eutr_sw: lentic
SURF_03.4_lentic en Surfacewater monitoring: 3.4 Eutrophication through surface water (including inundation): scheme section lentic waters SURF: 03.4_eutr_sw: lentic
SURF_03.4_lentic_group1 en types from oligotrophic environments oligotrophic
SURF_03.4_lentic_group2 en types from mesotrophic environments mesotrophic
SURF_03.4_lentic_group3 en types from weakly eutrophic environments weakly eutrophic
SURF_03.4_lentic_group4 en types from moderately eutrophic to eutrophic environments (moderately) eutrophic
SURF_03.4_lotic en Surfacewater monitoring: 3.4 Eutrophication through surface water (including inundation): partim lotic waters SURF: 03.4_eutr_sw: lotic
SURF_03.4_lotic en Surfacewater monitoring: 3.4 Eutrophication through surface water (including inundation): scheme section lotic waters SURF: 03.4_eutr_sw: lotic
SURF_03.4_lotic_group1 en types from oligotrophic environments oligotrophic
SURF_03.4_lotic_group2 en types from mesotrophic environments mesotrophic
SURF_03.4_lotic_group3 en types from weakly eutrophic environments weakly eutrophic
Expand Down Expand Up @@ -141,14 +141,14 @@ GW_03.3_group2 nl types van mesotroof milieu mesotroof
GW_03.3_group3 nl types van zwak eutroof milieu zwak eutroof
GW_03.3_group4 nl types van matig eutroof tot eutroof milieu (matig) eutroof
GW_04.2 nl Grondwatermeetnet: 4.2 Verzuring via het grondwater GW: 04.2_verzu_gw
GW_05.1_aq nl Grondwatermeetnet: 5.1 Verdroging via het grondwater: partim aquatisch GW: 05.1_verdro_gw: aq
GW_05.1_aq nl Grondwatermeetnet: 5.1 Verdroging via het grondwater: deelmeetnet aquatisch GW: 05.1_verdro_gw: aq
GW_05.1_aq_group1 nl types van bronbeken bronbeken
GW_05.1_aq_group2 nl types van stilstaand water met stabiel grondwaterregime stabiele plassen
GW_05.1_aq_group3 nl types van laaglandbeken laaglandbeken
GW_05.1_aq_group4 nl types van duinplassen (middelmatig grondwaterregime) duinplassen
GW_05.1_aq_group5 nl types van vennen met dynamisch grondwaterregime dynamische vennen
GW_05.1_quarries nl Grondwatermeetnet: 5.1 Verdroging via het grondwater: partim mergelgroeven GW: 05.1_verdro_gw: quarries
GW_05.1_terr nl Grondwatermeetnet: 5.1 Verdroging via het grondwater: partim terrestrisch GW: 05.1_verdro_gw: terr
GW_05.1_quarries nl Grondwatermeetnet: 5.1 Verdroging via het grondwater: deelmeetnet mergelgroeven GW: 05.1_verdro_gw: quarries
GW_05.1_terr nl Grondwatermeetnet: 5.1 Verdroging via het grondwater: deelmeetnet terrestrisch GW: 05.1_verdro_gw: terr
GW_05.1_terr_group1 nl types van zeer nat milieu zeer nat
GW_05.1_terr_group2 nl types van nat milieu nat
GW_05.1_terr_group3 nl types van matig nat milieu matig nat
Expand Down Expand Up @@ -184,17 +184,17 @@ HQ9130 nl Meetnet habitatkwaliteit: eiken-beukenbossen met wilde hyacint en pare
HQ9160 nl Meetnet habitatkwaliteit: eiken-haagbeukenbossen Meetnet habitatkwaliteit 9160
HQ9190 nl Meetnet habitatkwaliteit: oude eiken-berkenbossen Meetnet habitatkwaliteit 9190
HQ91E0 nl Meetnet habitatkwaliteit: vochtige alluviale bossen Meetnet habitatkwaliteit 91E0
INUN nl Inundatiemeetnet NA
INUN_03.4 nl Inundatiemeetnet: 3.4 Eutrofiëring via het oppervlaktewater (incl. overstromingswater en afspoeling) INUN: 03.4_eutr_ow
INUN_061 nl Inundatiemeetnet: 61 Toename overstromingsduur of -frequentie (incl. getijden) INUN: 061_overstr_plus
INUN_062 nl Inundatiemeetnet: 62 Afname overstromingsduur of -frequentie (incl. getijden) INUN: 062_overstr_min
INUN_063 nl Inundatiemeetnet: 63 Toename van stroomsnelheid, waterpeil en/of de fluctuatie ervan INUN: 063_owpeil_plus
INUN_064 nl Inundatiemeetnet: 64 Afname van stroomsnelheid, waterpeil en/of de fluctuatie ervan INUN: 064_owpeil_min
INUN_065 nl Inundatiemeetnet: 65 Toename golfslagwerking INUN: 065_golf_plus
INUN_066 nl Inundatiemeetnet: 66 Afname golfslagwerking INUN: 066_golf_min
INUN_07.2 nl Inundatiemeetnet: 7.2 Verzoeting via het oppervlaktewater (incl. overstromingswater) INUN: 07.2_verzoet_ow
INUN_08.4 nl Inundatiemeetnet: 8.4 Verontreiniging via het oppervlaktewater (incl. overstromingswater) INUN: 08.4_verontr_ow
INUN_103 nl Inundatiemeetnet: 103 Klimaatverandering: zeespiegelstijging INUN: 103_klim_zee
INUN nl Inundatiewatermeetnet NA
INUN_03.4 nl Inundatiewatermeetnet: 3.4 Eutrofiëring via het oppervlaktewater (incl. overstromingswater en afspoeling) INUN: 03.4_eutr_ow
INUN_061 nl Inundatiewatermeetnet: 61 Toename overstromingsduur of -frequentie (incl. getijden) INUN: 061_overstr_plus
INUN_062 nl Inundatiewatermeetnet: 62 Afname overstromingsduur of -frequentie (incl. getijden) INUN: 062_overstr_min
INUN_063 nl Inundatiewatermeetnet: 63 Toename van stroomsnelheid, waterpeil en/of de fluctuatie ervan INUN: 063_owpeil_plus
INUN_064 nl Inundatiewatermeetnet: 64 Afname van stroomsnelheid, waterpeil en/of de fluctuatie ervan INUN: 064_owpeil_min
INUN_065 nl Inundatiewatermeetnet: 65 Toename golfslagwerking INUN: 065_golf_plus
INUN_066 nl Inundatiewatermeetnet: 66 Afname golfslagwerking INUN: 066_golf_min
INUN_07.2 nl Inundatiewatermeetnet: 7.2 Verzoeting via het oppervlaktewater (incl. overstromingswater) INUN: 07.2_verzoet_ow
INUN_08.4 nl Inundatiewatermeetnet: 8.4 Verontreiniging via het oppervlaktewater (incl. overstromingswater) INUN: 08.4_verontr_ow
INUN_103 nl Inundatiewatermeetnet: 103 Klimaatverandering: zeespiegelstijging INUN: 103_klim_zee
lentic nl stilstaande wateren NA
lotic nl stromende wateren NA
MHQ nl Monitoringprogramma biotische habitatkwaliteit NA
Expand All @@ -213,12 +213,12 @@ SOIL_08.2 nl Bodemmeetnet: 8.2 Verontreiniging via de bodem SOIL: 08.2_verontr_b
SURF nl Oppervlaktewatermeetnet NA
SURF_012 nl Oppervlaktewatermeetnet: 12 Toename bodemdynamiek (erosie, omwoeling, verstuiving) SURF: 012_boddyn_plus
SURF_03.2 nl Oppervlaktewatermeetnet: 3.2 Eutrofiëring via de bodem SURF: 03.2_eutr_bod
SURF_03.4_lentic nl Oppervlaktewatermeetnet: 3.4 Eutrofiëring via het oppervlaktewater (incl. overstromingswater en afspoeling): partim stilstaande wateren SURF: 03.4_eutr_ow: lentic
SURF_03.4_lentic nl Oppervlaktewatermeetnet: 3.4 Eutrofiëring via het oppervlaktewater (incl. overstromingswater en afspoeling): deelmeetnet stilstaande wateren SURF: 03.4_eutr_ow: lentic
SURF_03.4_lentic_group1 nl types van oligotroof milieu oligotroof
SURF_03.4_lentic_group2 nl types van mesotroof milieu mesotroof
SURF_03.4_lentic_group3 nl types van zwak eutroof milieu zwak eutroof
SURF_03.4_lentic_group4 nl types van matig eutroof tot eutroof milieu (matig) eutroof
SURF_03.4_lotic nl Oppervlaktewatermeetnet: 3.4 Eutrofiëring via het oppervlaktewater (incl. overstromingswater en afspoeling): partim stromende wateren SURF: 03.4_eutr_ow: lotic
SURF_03.4_lotic nl Oppervlaktewatermeetnet: 3.4 Eutrofiëring via het oppervlaktewater (incl. overstromingswater en afspoeling): deelmeetnet stromende wateren SURF: 03.4_eutr_ow: lotic
SURF_03.4_lotic_group1 nl types van oligotroof milieu oligotroof
SURF_03.4_lotic_group2 nl types van mesotroof milieu mesotroof
SURF_03.4_lotic_group3 nl types van zwak eutroof milieu zwak eutroof
Expand Down
2 changes: 1 addition & 1 deletion inst/textdata/namelist.yml
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Expand Up @@ -6,7 +6,7 @@
- lang
- code
hash: 3345146f5a5902a684bc1b965f00486c82952d94
data_hash: 7c3bb83b09e5613712999d40029af0170cbbd90e
data_hash: f070e7c2d9a0782eda2000df4152e435895db638
code:
class: character
lang:
Expand Down
23 changes: 17 additions & 6 deletions misc/generate_textdata/10_schemes_and_scheme_types.Rmd
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Expand Up @@ -23,7 +23,14 @@ Reading data frame coming from the [n2khab-mne-selections](https://gitlab.com/fl

```{r}
schemes_types_nl <-
read_vc("rawraw_data/10_compmeetnet_types_milieudrukken")
read_vc("rawraw_data/10_compmeetnet_types_milieudrukken") %>%
# fix terms on the fly: still to be implemented in n2khab-mne-selections repo!
mutate(
Comp_meetnet = fct_recode(
Comp_meetnet,
Inundatiewatermeetnet = "Inundatiemeetnet"
)
)
```

Reading a link between older Dutch codes of environmental pressures and the current ep_codes:
Expand Down Expand Up @@ -81,7 +88,7 @@ schemes_schemetypes <-
"Bodemmeetnet" = "SOIL",
"Grondwatermeetnet" = "GW",
"Oppervlaktewatermeetnet" = "SURF",
"Inundatiemeetnet" = "INUN"),
"Inundatiewatermeetnet" = "INUN"),
attribute_2 = factor(attribute_2,
levels =
ep_codes %>%
Expand Down Expand Up @@ -370,7 +377,7 @@ cbind(code = c("ATM", "SOIL", "GW", "SURF", "INUN"),
"Bodemmeetnet",
"Grondwatermeetnet",
"Oppervlaktewatermeetnet",
"Inundatiemeetnet")) %>%
"Inundatiewatermeetnet")) %>%
rbind(matrix(c("aq", "en", "aquatic",
"terr", "en", "terrestrial",
"quarries", "en", "marl quarries",
Expand Down Expand Up @@ -423,13 +430,17 @@ schemes %>%
left_join(namelist %>% select(-shortname),
by = c("attribute_3" = "code", "lang")) %>%
rename(name_4 = name) %>%
mutate(name = str_c(name_1,
mutate(partim = case_when(
is.na(name_4) ~ NA_character_,
lang == "en" ~ ": scheme section ",
lang == "nl" ~ ": deelmeetnet "
),
name = str_c(name_1,
": ",
name_3,
ifelse(is.na(name_4),
"",
str_c(": partim ",
name_4)
str_c(partim, name_4)
)
),
shortname = str_c(attribute_1,
Expand Down
1 change: 1 addition & 0 deletions misc/generate_textdata/index.Rmd
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Expand Up @@ -52,6 +52,7 @@ library(knitr)
library(googlesheets4)
local_gs4_quiet()
library(git2rdata)
library(forcats)
library(n2khab)
opts_chunk$set(
echo = TRUE,
Expand Down
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