Spatial Metabolomics Engine

High throughput molecular annotation for imaging mass spectrometry datasets

Main Features

• Centroided imzML files as input dataset files
• Apache Spark based implementation for easy scaling from one machine to a cluster
• Can be run in both local and distributed modes
• Comes with unit, regression and scientific tests
• Web application for upload and browsing search results
• Ansible project for easy deployment to AWS

Installation

Please check the sm-engine-ansible project

Uploading Dataset and Browsing Results

Please visit the help page of our web application running on AWS:

http://metasp.eu/#/help

Running sm-engine tests

Install CircleCI CLI tool and run circleci build from the project root.

License

This project is licensed under the Apache 2.0 license.