riboseq-flow v1.1.1

• fixed PCA if statement and colors

riboseq-flow v1.1.0

• add option to count reads over CDS
• updated PCA display in MultiQC
• bump STAR, samtools, MultiQC versions
• made saving of trimmed files and saving indexes for alignment optional
• tidy-up cutadapt module
• removed cutadapt TSO arguments
• use all adaptor-trimmed reads for mapping length analysis and useful reads calculations (instead of length-filtered)
• renamed contaminants input param name
• documentation updates

riboseq-flow v1.0.2

• add read length filter qc to multiqc
• changed order of sections in multiqc
• updated location of coverage tracks in docs
• clarifications in docs and multiqc section descriptions
• PCA performed onlt if multiple samples provided

riboseq-flow v1.0.1

• updated run instructions
• fixed P-site bed output

riboseq-flow v1.0.0

The first main release of riboseq-flow.