NEURON simulation source code

Source code from Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS Comput Biol. 2012;8(7) [pubmed]

Adapted from original ModelDB submission, updated to run inside companion docker image.

The code here reproduces Figures 4b, 4d, and 7ab from the paper.

Usage

# create docker image
cd docker && docker build -t neuron . && cd -

# run simulations
time docker run -it -v /full/path/to/bfb-etal-2012:/nrn -w /nrn neuron ./runall.sh
# This will generate 2 h5 files in data/ and 3 png files in figs/

Notes

Figure 7ab traces may not exactly match those in paper due to PRNG issues.