add paper reference

README.md

@@ -277,9 +277,9 @@ It is released with zero warranty for any purpose and the authors retain no liab
 
 ## References
 
-If you use **STRprofiler** in your research, please cite the DOI:
+If you use **STRprofiler** in your research, please cite the following:
 
-Jared Andrews, Mike Lloyd, & Sam Culley. (2024). j-andrews7/strprofiler: v0.4.1 (v0.4.1). Zenodo. https://doi.org/10.5281/zenodo.7348386
+Jared M Andrews, Michael W Lloyd, Steven B Neuhauser, Margaret Bundy, Emily L Jocoy, Susan D Airhart, Carol J Bult, Yvonne A Evrard, Jeffrey H Chuang, Suzanne Baker, STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication, Bioinformatics, 2024;, btae713, https://doi.org/10.1093/bioinformatics/btae713
 
 If you use the `clastr` command or functionality from the Shiny application, please cite the Cellosaurus and CLASTR publications:
 

strprofiler/shiny_app/www/help.html

@@ -1785,11 +1785,15 @@ <h1>Python Package &amp; CLI</h1>
 <div id="references" class="section level1">
 <h1>References</h1>
 <p><code>STRprofiler</code> is provided under the MIT license. If you
-use this app in your research please cite:<br />
-Jared Andrews, Mike Lloyd, &amp; Sam Culley. (2024).
-<a href="https://github.com/j-andrews7/strprofiler" target="_blank">j-andrews7/strprofiler</a>:
-v0.4.1. Zenodo.
-<a href="https://doi.org/10.5281/zenodo.10544686" target="_blank">https://doi.org/10.5281/zenodo.10544686</a></p>
+use this app in your research, please cite:<br />
+Jared M Andrews, Michael W Lloyd, Steven B Neuhauser, Margaret Bundy,
+Emily L Jocoy, Susan D Airhart, Carol J Bult, Yvonne A Evrard, Jeffrey H
+Chuang, Suzanne Baker, STRprofiler: efficient comparisons of short
+tandem repeat profiles for biomedical model authentication,
+Bioinformatics, 2024;,
+btae713,<a href="https://doi.org/10.1093/bioinformatics/btae713" target="_blank">https://doi.org/10.1093/bioinformatics/btae713</a></p>
+<p>If you use the <code>strprofiler clastr</code> command or Cellosaurus
+database in the app, please cite:</p>
 <p>Bairoch A. (2018) The Cellosaurus, a cell line knowledge resource.
 Journal of Biomolecular Techniques. 29:25-38. DOI:
 10.7171/jbt.18-2902-002; PMID: 29805321</p>

strprofiler/shiny_app/www/help.md

@@ -143,8 +143,10 @@ The full docs are available on [ReadTheDocs](https://strprofiler.readthedocs.io/
 
 # References
 
-`STRprofiler` is provided under the MIT license. If you use this app in your research please cite:    
-Jared Andrews, Mike Lloyd, & Sam Culley. (2024). <a href="https://github.com/j-andrews7/strprofiler" target="_blank">j-andrews7/strprofiler</a>: v0.4.1. Zenodo. <a href="https://doi.org/10.5281/zenodo.10544686" target="_blank">https://doi.org/10.5281/zenodo.10544686</a>
+`STRprofiler` is provided under the MIT license. If you use this app in your research, please cite:    
+Jared M Andrews, Michael W Lloyd, Steven B Neuhauser, Margaret Bundy, Emily L Jocoy, Susan D Airhart, Carol J Bult, Yvonne A Evrard, Jeffrey H Chuang, Suzanne Baker, STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication, Bioinformatics, 2024;, btae713,<a href="https://doi.org/10.1093/bioinformatics/btae713" target="_blank">https://doi.org/10.1093/bioinformatics/btae713</a>
+
+If you use the `strprofiler clastr` command or Cellosaurus database in the app, please cite:
 
 Bairoch A. (2018) The Cellosaurus, a cell line knowledge resource. Journal of Biomolecular Techniques. 29:25-38. DOI: 10.7171/jbt.18-2902-002; PMID: 29805321