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Dev/main #221

Merged
merged 257 commits into from
May 9, 2024
Merged

Dev/main #221

merged 257 commits into from
May 9, 2024

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rhoadesScholar
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@avweigel
docs: 📝 this commit will add documentation to options.py
cd8da0c
@avweigel
docs: 📝 this commit will add documentation to cli.py
fd75a82
@avweigel
docs: 📝 this commit will add documentation to apply.py
7702206
@avweigel
docs: 📝 this commit will add documentation to voi.py
8933910
@avweigel
docs: 📝 this commit will add documentation to view.py
482ee80
@avweigel
docs: 📝 this commit will add documentation to pipeline.py
9572839
@avweigel
docs: 📝 this commit will add documentation to affinities.py and balan…
54b8840 
…ce_weights.py
@avweigel
docs: 📝 this commit will add documentation to weights_store.py
3392f7c
@avweigel
docs: 📝 this commit will add documentation to stats_store.py
f8a63ed
@avweigel
docs: 📝 this commit will add documentation to mongo_stats_store.py
0509e84
@avweigel
docs: 📝 this commit will add documentation to mongo_config_store.py
44a031a
@avweigel
docs: 📝 this commit will add documentation to local_weights_store.py
0e28749
@avweigel
docs: 📝 this commit will add documentation to local_array_store.py
6996c73
@avweigel
docs: 📝 this commit will add documentation to file_stats_store.py
bb45e12
@avweigel
docs: 📝 this commit will add documentation to file_config_store.py
aab9b36
@avweigel
docs: 📝 this commit will add documentation to create_store.py
ee3b64d
@avweigel
docs: 📝 this commit will add documentation to converter.py
3675006
@avweigel
docs: 📝 this commit will add documentation for conversion_hooks.py
ef8977e
@avweigel
docs: 📝 this commit will add documentation to config_store.py
dfc6b75
@avweigel
docs: 📝 this commit will add documentation to array_store.py
0b3abfe
@avweigel
docs: 📝 this commit will add documentation to reject_if_empty.py
f3e0e20
@avweigel
docs: 📝 this commit will add documentation to product.py
71b5386
@avweigel
docs: 📝 this commit will add documentation to gamma_noise.py
0cab03a
@avweigel
docs: 📝 this commit will add documentation to elastic_augment_fuse.py
3f4bc9d
@avweigel
docs: 📝 this commit will add documentation to dacapo_points_source.py
2231e7e
@avweigel
docs: 📝 this commit will add documentation to dacapo_create_target.py
4a9afb5
@avweigel
docs: 📝 this commit will add documentation to dacapo_array_source.py
610e428
@avweigel
docs: 📝 this commit will add documentation to copy.py
f8caae1
@avweigel
docs: 📝 this commit will add documentation to __init__.py
23c7cca
@avweigel
docs: 📝 this commit will add documentation to validation_scores.py
116bfbb
rhoadesScholar and others added 26 commits April 18, 2024 11:09
@rhoadesScholar
Merge branch 'main' into dev/main
b802856
@rhoadesScholar
Merge branch 'dev/main' of github.com:janelia-cellmap/dacapo into dev…
fc56d0d 
…/main
@rhoadesScholar
docs: 📝 Add dummy example for run_blockwise()
0f7a007 
Also fixed docstrings for blockwise worker functions.
@rhoadesScholar
chore: 🙈 Make path_to_worker in dummy_script obvious
75369bd
@rhoadesScholar
fix: 🐛 Fix 0-gpu Bsub context
efce6e0
@rhoadesScholar
fix: 🐛 Fix typos
7ab381f
@mzouink
dockerfile
f50834d
@rhoadesScholar
Dockerize the docker dockering (#245)
dc0daa5
@mzouink
s3 weight store
0ef3844
@rhoadesScholar
perf: 🚑️ Add flag to save tmp files during blockwise segmentation
b4bfd8e
@rhoadesScholar
Merge branch 'dev/main' of github.com:janelia-cellmap/dacapo into dev…
207d514 
…/main
@mzouink
aws examples
8007473
@mzouink
Merge branch 'dev/main' into s3
0dda828
@rhoadesScholar
build: ➕ Add s3 dependencies.
ab5f4d0
@mzouink
postprocess example
cd6f5ae
@rhoadesScholar
postprocess example (#248)
fa8348d
@mzouink
fix typo
95d3f79
@mzouink
aws example
1b414a7
@mzouink
reset options
7b5ab49
@rhoadesScholar
Merge branch 's3' of github.com:janelia-cellmap/dacapo into s3
5c18644
@rhoadesScholar
Merge branch 'dev/main' of github.com:janelia-cellmap/dacapo into dev…
b194cbc 
…/main
@gbhuang
fixed incorrect type for kernel_size_down and kernel_size_up in cnnec…
6d97a24 
…tome_net_config
@mzouink
Merge branch 'dev/main' into fix_cnnectome_config
7be30d3
@mzouink
type fix for cnnectome_net_config (#250)
d168877 
fixed incorrect type for kernel_size_down and kernel_size_up in
cnnectome_net_config
@mzouink
Merge branch 'dev/main' into s3
ee56cb3
@mzouink
S3 (#247)
9ee5feb
@mzouink
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mzouink commented May 3, 2024

i think it is good to get merged to main

  • in the future we don't need dev/main anymore as dacapo now in pypi

@mzouink mzouink merged commit d81281f into main May 9, 2024
4 of 6 checks passed
@mzouink mzouink deleted the dev/main branch May 9, 2024 15:33
@mzouink mzouink restored the dev/main branch May 9, 2024 15:36
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@rhoadesScholar @mzouink @avweigel @gbhuang