Releases: jbelyeu/samplot
enable csi indices for annotations
fix bug with matplotlib y-axis scientific notation
v1.1.5 version bump
max coverage
new maximum coverage option and some new tests
several additional issues fixed
removed insert-size axis labels for coverage-only plots, fixed control-sample selection which was dropping all but three samples, fixed issues with out-of-bounds CIs, and other small bugs fixed.
vcf control fix
Fixed bug that truncated listing of control samples
samplot vcf bugfixes
fixes issues with plotting CIs and translocations with samplot vcf
added functional tests for above fixes
minor tweak to y-axis height
aesthetic modification: when same_yaxis_scales
is used, the height of the plot is slightly increased to decrease trimming of the plot
added support for picard-style alignment index names
Previously only supported alignment files with the naming convention {alignment_file}.{bam/cram/sam}.{bai/crai/sai}. Now the pattern {alignment_file}.{bai/crai/sai} is also allowed
plotting speed improvements
Added coverage plot downsampling so large regions plot faster. Each plot will now include up to 1000 x-axis points of coverage instead of 1 per base pair
Also added option to not include coverage plot or alter the number of x-axis points in the coverage plot
Threw in a change to allow split-panel variants (translocations) in samplot vcf
added samplot vcf debug option
new option to print out the reason for exclusion of excluded variants from VCF