Fixed event update #121
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name: LORIS Test Suite | |
on: | |
- push | |
- pull_request | |
jobs: | |
buildjs: | |
env: | |
EEG_VIS_ENABLED: 'true' | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install EEG package dependencies | |
# We only need to install protobuf-compiler | |
# Other deps were added to fix an apt dependency issue introduced by a new github Ubuntu image | |
# (see https://github.com/actions/runner-images/blob/releases/ubuntu22/20230305/images/linux/Ubuntu2204-Readme.md) | |
# that updated the list of installed apt packages/apt repositories. That issue may disappear in future Ubuntu images. | |
run: | | |
sudo apt install -y imagemagick-6-common libmagickcore-6.q16-6 libmagickwand-6.q16-6 \ | |
libprotobuf-dev libprotobuf23 libprotoc23 protobuf-compiler | |
cd modules/electrophysiology_browser/jsx/react-series-data-viewer/ | |
protoc protocol-buffers/chunk.proto --js_out=import_style=commonjs,binary:./src/ | |
- name: Install npm modules | |
run: npm ci | |
- name: Compile LORIS javascript | |
run: npm run compile | |
- name: Create LORIS JS tarball | |
run: tar cfvz lorisjs.tar.gz htdocs/js/components/ modules/*/js/* | |
- name: Create node_modules tarball | |
run: tar cfvz node_modules.tar.gz node_modules | |
- uses: actions/upload-artifact@v3 | |
name: Upload node_modules artifact | |
with: | |
name: node_modules | |
path: node_modules.tar.gz | |
- uses: actions/upload-artifact@v3 | |
name: Upload lorisjs.tar.gz artifact | |
with: | |
name: lorisjs | |
path: lorisjs.tar.gz | |
buildphp: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
php: ['8.1', '8.2'] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup PHP | |
uses: shivammathur/setup-php@v2 | |
with: | |
php-version: ${{ matrix.php }} | |
extensions: zip, php-ast | |
- name: Validate composer.json and composer.lock | |
run: composer validate | |
- name: Cache Composer packages | |
id: composer-cache | |
run: echo "::set-output name=dir::$(composer config cache-files-dir)" | |
- name: Composer cache | |
uses: actions/cache@v2 | |
with: | |
path: ${{ steps.composer-cache.outputs.dir }} | |
key: ${{ runner.os }}-composer-${{ hashFiles('composer.lock') }} | |
restore-keys: ${{ runner.os }}-composer- | |
- name: Install composer dependencies | |
if: steps.composer-cache.outputs.cache-hit != 'true' | |
run: composer install --prefer-dist --no-progress --no-suggest | |
- name: Create vendor tarball | |
run: tar cfvz vendor-php${{matrix.php}}.tar.gz vendor | |
- uses: actions/upload-artifact@v3 | |
name: Upload vendor-php${{matrix.php}}.tar.gz artifact | |
with: | |
name: vendor-php${{matrix.php}} | |
path: vendor-php${{matrix.php}}.tar.gz | |
api: | |
runs-on: ubuntu-latest | |
needs: | |
- buildjs | |
- buildphp | |
env: | |
DB_DATABASE: LorisTest | |
DB_USER: SQLTestUser | |
DB_PASSWORD: TestPassword | |
LORIS_DB_CONFIG: project/config.xml | |
DOCKER_WEB_SERVER: http://localhost:8000/ | |
strategy: | |
fail-fast: false | |
matrix: | |
php: ['8.1', '8.2'] | |
apiversion: ['v0.0.3', 'v0.0.4-dev'] | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/download-artifact@v3 | |
name: Download node_modules artifact | |
with: | |
name: node_modules | |
path: . | |
- uses: actions/download-artifact@v3 | |
name: Download compiled LORIS javascript artifact | |
with: | |
name: lorisjs | |
path: . | |
- uses: actions/download-artifact@v3 | |
name: Download PHP dependencies artifact | |
with: | |
name: vendor-php${{matrix.php}} | |
path: . | |
- name: Extract node_modules | |
run: tar xfvz node_modules.tar.gz | |
- name: Extract compiled JS | |
run: tar xfvz lorisjs.tar.gz | |
- name: Extract composer vendor directory | |
run: tar xfvz vendor-php${{matrix.php}}.tar.gz | |
- name: Generate VERSION file | |
run: make VERSION | |
- name: Setup project/ directory | |
run: | | |
mkdir -p project/instruments | |
cp test/config.xml project/config.xml | |
cp test/test_instrument/NDB_BVL_Instrument_testtest.class.inc project/instruments/ | |
cp -r raisinbread/instruments/* project/instruments/ | |
sed -i 's/<sandbox>1<\/sandbox>/<sandbox>0<\/sandbox>/g' project/config.xml | |
sed -i 's/<adminUser>SQLTestUser<\/adminUser>/<adminUser>root<\/adminUser>/g' project/config.xml | |
sed -i 's/<adminPassword>TestPassword<\/adminPassword>/<adminPassword>root<\/adminPassword>/g' project/config.xml | |
sed -i 's/<host>db<\/host>/<host>localhost<\/host>/g' project/config.xml | |
cat project/config.xml | |
- name: Set up MySQL | |
run: | | |
sudo /etc/init.d/mysql start | |
mysql -e 'CREATE DATABASE ${{ env.DB_DATABASE }};' -uroot -proot | |
mysql -e "CREATE USER '${{env.DB_USER}}'@'localhost' IDENTIFIED BY '${{env.DB_PASSWORD}}'" -uroot -proot | |
mysql -e "GRANT UPDATE,INSERT,SELECT,DELETE,CREATE TEMPORARY TABLES ON ${{env.DB_DATABASE}}.* TO '${{env.DB_USER}}'@'localhost'" -uroot -proot | |
- name: Source default schema and Raisinbread | |
run: | | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-00-schema.sql | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-01-Modules.sql | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-02-Permission.sql | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-03-ConfigTables.sql | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-04-Help.sql | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < SQL/0000-00-05-ElectrophysiologyTables.sql | |
find raisinbread/instruments/instrument_sql -name *.sql -exec sh -c "echo Sourcing {}; mysql ${{ env.DB_DATABASE}} -uroot -proot < {}" \; | |
find raisinbread/RB_files/ -name *.sql -exec sh -c "echo Sourcing {}; mysql ${{ env.DB_DATABASE}} -uroot -proot < {}" \; | |
- name: Source instrument schemas | |
run: | | |
find raisinbread/instruments/instrument_sql -name 0000-*.sql -exec sh -c "echo Sourcing {}; mysql ${{ env.DB_DATABASE}} -uroot -proot < {}" \; | |
echo Sourcing test/test_instrument/testtest.sql | |
mysql ${{ env.DB_DATABASE}} -uroot -proot < test/test_instrument/testtest.sql | |
- name: Set LORIS base path | |
run: | | |
echo UPDATE Config SET VALUE=\'`pwd`/\' WHERE ConfigID IN \(SELECT ID FROM ConfigSettings WHERE Name=\'base\'\) | |
echo UPDATE Config SET VALUE=\'`pwd`/\' WHERE ConfigID IN \(SELECT ID FROM ConfigSettings WHERE Name=\'base\'\) | mysql ${{env.DB_DATABASE}} -uroot -proot | |
- name: Setup PHP | |
uses: shivammathur/setup-php@v2 | |
with: | |
php-version: ${{ matrix.php }} | |
extensions: zip, php-ast | |
- name: Start PHP Web Server | |
run: php -S localhost:8000 -t htdocs/ htdocs/router.php 2>error_log & | |
- name: Test server | |
run: | | |
sleep 1 | |
curl -v http://localhost:8000 | |
- name: Run Test Suite | |
run: | | |
vendor/bin/phpunit --configuration test/phpunit.xml --testsuite LorisAPITests --group api-${{ matrix.apiversion }} | |
- name: Print Error Logs | |
if: always() | |
run: cat error_log | |
docker: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
testsuite: ['integration'] | |
php: ['8.1','8.2'] | |
ci_node_index: [0,1,2,3] | |
include: | |
# add a variable but do not display it in the job's name | |
- ci_node_total: 4 | |
- testsuite: 'static' | |
php: '8.1' | |
- testsuite: 'static' | |
php: '8.2' | |
- testsuite: 'unit' | |
php: '8.1' | |
- testsuite: 'unit' | |
php: '8.2' | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup PHP | |
uses: shivammathur/setup-php@v2 | |
with: | |
php-version: ${{ matrix.php }} | |
extensions: zip, php-ast | |
- name: Validate composer.json and composer.lock | |
run: composer validate | |
- name: Cache Composer packages | |
id: composer-cache | |
run: echo "::set-output name=dir::$(composer config cache-files-dir)" | |
- name: Composer cache | |
uses: actions/cache@v2 | |
with: | |
path: ${{ steps.composer-cache.outputs.dir }} | |
key: ${{ runner.os }}-composer-${{ hashFiles('composer.lock') }} | |
restore-keys: ${{ runner.os }}-composer- | |
- name: Change PHP Version in Dockerfile | |
run: sed -i "s/8.0/${{ matrix.php }}/g" Dockerfile.test.php8 | |
- name: Install package dependencies | |
# We only need to install protobuf-compiler | |
# Other deps were added to fix an apt dependency issue introduced by a new github Ubuntu image | |
# (see https://github.com/actions/runner-images/blob/releases/ubuntu22/20230305/images/linux/Ubuntu2204-Readme.md) | |
# that updated the list of installed apt packages/apt repositories. That issue may disappear in future Ubuntu images. | |
run: | | |
sudo apt install -y imagemagick-6-common libmagickcore-6.q16-6 libmagickwand-6.q16-6 \ | |
libprotobuf-dev libprotobuf23 libprotoc23 protobuf-compiler | |
cd modules/electrophysiology_browser/jsx/react-series-data-viewer/ | |
protoc protocol-buffers/chunk.proto --js_out=import_style=commonjs,binary:./src/ | |
- name: Install composer dependencies | |
if: steps.composer-cache.outputs.cache-hit != 'true' | |
run: composer install --prefer-dist --no-progress --no-suggest | |
- name: Build LORIS | |
run: make dev | |
- name: Run Test Suite | |
run: | | |
# set sandbox to 1 before running the tests | |
# since some tests only run in sandbox environments | |
sed -i 's/<sandbox>0<\/sandbox>/<sandbox>1<\/sandbox>/g' test/config.xml | |
npm run tests:${{ matrix.testsuite }} | |
env: | |
# Specifies how many jobs you would like to run in parallel, | |
CI_NODE_TOTAL: ${{ matrix.ci_node_total }} | |
# Use the index from matrix as an environment variable | |
CI_NODE_INDEX: ${{ matrix.ci_node_index }} |