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50 Open 36 Closed
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Issues list

extract_kraken_reads.py ValueError: invalid literal for int() with base 10: 'tot_lvl'
#100 opened Sep 27, 2024 by RieLuc23
1
combine_kreports.py error
#98 opened Jun 12, 2024 by sarrahroseml
sample and negative control
#97 opened Jun 6, 2024 by nicolo-tellini
beta_diversity.py error
#96 opened Jun 4, 2024 by Kamouyiaraki
no reads generated after running extract_kraken_reads.py
#95 opened Mar 28, 2024 by caizhangbin
2
differences in report from kraken2 and make_kreport.py
#94 opened Feb 13, 2024 by moxgreen
extract_kraken_reads.py not working when read mates have unique names
#93 opened Jan 26, 2024 by RHaagmans
extract_kraken_reads.py accept bracken reports?
#92 opened Nov 8, 2023 by Sabrin2020
2
1_all vs 1_lvl
#91 opened Nov 8, 2023 by mars188
RuntimeError: generator raised StopIteration
#90 opened Nov 7, 2023 by snehamurthy21
"other entries", "other sequences" raise AttributeError when using --include-children
#89 opened Oct 26, 2023 by yeemey
Make_kreports.py breaks if all reads unclassified enhancement New feature or request
#86 opened Sep 27, 2023 by mattheatley
@jenniferlu717
1
extract_kraken_reads.py returns different read counts for paired fastqs
#85 opened Sep 26, 2023 by matbeale
2
combining krakenuniq reports
#83 opened Sep 14, 2023 by Sabrin2020
2
Should sequencing depth be considered？
#78 opened May 30, 2023 by Yunliang81
2
No kraken2_translate.py after downloading the KrakenTools?
#77 opened May 27, 2023 by B-1991-ing
1
Is it possible to filter the kraken.report or bracken.report?
#74 opened May 4, 2023 by B-1991-ing
1
extract_kraken_reads with --exclude excluding multiple taxids
#73 opened Apr 21, 2023 by Afu5956
1
Error when using --include-children
#72 opened Mar 28, 2023 by nblouin
2
kreport2map.py and strain profile
#68 opened Feb 23, 2023 by alienzj
How can I combine kraken2 output/reports from different samples and convert them into one report using Kraken Tool script?
#66 opened Feb 18, 2023 by Olla10
Is it possible to create a new *.kraken and *.kraken.report besides extract specific reads
#64 opened Feb 7, 2023 by B-1991-ing
Running alpha diversity on combined bracken reports
#63 opened Feb 1, 2023 by adixit213
--include-children functionality in filter_bracken.out.py
#60 opened Jan 19, 2023 by joshuakirsch
Error running kreports2mpa.py
#59 opened Jan 12, 2023 by ghost
3
ProTip! Updated in the last three days: updated:>2024-12-19.