iplant-treerec
==============

==INTRODUCTION
These are the back end services that power iPlant's Tree Reconciliation.

This is alpha code. It worked when we ran it, but no guarantees of any kind are made that it will work for anyone else anywhere.

More information about iPlant's Open Source policies and current status is available at http://iplantcollaborative.org/about/policies/open-source.

An update to this README is in progress.


==LICENSE
See the LICENSE file included with this code.


==SOURCE
Source code is available at: https://github.com/iPlantCollaborativeOpenSource/iplant-treerec


==DEPENDENCIES
This code requires:

 * Apache http server
 * MySQL
 * bioperl-1.6.1
 * mod_perl
 * mod_perl-devel
 * CPAN perl modules (listed in INSTALL)
 * libapreq2-2.13


==INSTALLATION
For detailed instructions, including information about setting up the environment and dependencies, see INSTALL.


==CONFIGURATION
See INSTALL.


==MORE
Additional documentation on the Perl modules exists in the iplant-treerec_html folder.


==ISSUES/BUGS/QUESTIONS
Use the issue tracker available from the GitHub repository at the link listed under SOURCE above. Click Issues to submit a question or report a problem.


==CONTRIBUTING
iPlant requires all outside collaborators (those not employed by iPlant) to sign and submit a Contributor License Agreement. Details as well as answers to Frequently Asked Questions about this agreement are available at http://www.iplantcollaborative.org/opensource/CLA.

Other steps in the process are still being created. While this message remains, email opensource@iplantcollaborative.org