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jgrss/torch20 #74

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wants to merge 299 commits into from
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jgrss/torch20 #74

wants to merge 299 commits into from
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Commits on Dec 19, 2023

  1. add model option

    @jgrss
    jgrss committed Dec 19, 2023
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  2. test depth

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    jgrss committed Dec 19, 2023
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  3. format

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    jgrss committed Dec 19, 2023
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  4. format

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    jgrss committed Dec 19, 2023
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  5. format

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    jgrss committed Dec 19, 2023
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  6. add model option

    @jgrss
    jgrss committed Dec 19, 2023
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  7. format

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    jgrss committed Dec 19, 2023
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  8. rel import

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    jgrss committed Dec 19, 2023
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  9. format

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    jgrss committed Dec 19, 2023
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  10. correct filters

    @jgrss
    jgrss committed Dec 19, 2023
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  11. change name

    @jgrss
    jgrss committed Dec 19, 2023
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  12. format

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    jgrss committed Dec 19, 2023
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  13. rename

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    jgrss committed Dec 19, 2023
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  14. rename and fix tests

    @jgrss
    jgrss committed Dec 19, 2023
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  15. update import

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    jgrss committed Dec 19, 2023
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  16. update import

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    jgrss committed Dec 19, 2023
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  17. add weights

    @jgrss
    jgrss committed Dec 19, 2023
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  18. update import

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    jgrss committed Dec 19, 2023
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  19. move weights and add final

    @jgrss
    jgrss committed Dec 19, 2023
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  20. update imports

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    jgrss committed Dec 19, 2023
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  21. update imports

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    jgrss committed Dec 19, 2023
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  22. format

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    jgrss committed Dec 19, 2023
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  23. format

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    jgrss committed Dec 19, 2023
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Commits on Dec 20, 2023

  1. add model type

    @jgrss
    jgrss committed Dec 20, 2023
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  2. add model type

    @jgrss
    jgrss committed Dec 20, 2023
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  3. remove modules and add elunet

    @jgrss
    jgrss committed Dec 20, 2023
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  4. add reselunet

    @jgrss
    jgrss committed Dec 20, 2023
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  5. add scheduler

    @jgrss
    jgrss committed Dec 20, 2023
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Commits on Jan 1, 2024

  1. format

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    jgrss committed Jan 1, 2024
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Commits on Jan 2, 2024

  1. format

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    jgrss committed Jan 2, 2024
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Commits on Jan 8, 2024

  1. format

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    jgrss committed Jan 8, 2024
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Commits on Apr 17, 2024

  1. upgrade geowombat

    @jgrss
    jgrss committed Apr 17, 2024
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  2. change compression and block graph creation

    @jgrss
    jgrss committed Apr 17, 2024
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  3. format

    @jgrss
    jgrss committed Apr 17, 2024
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  4. fix arg input

    @jgrss
    jgrss committed Apr 17, 2024
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  5. format

    @jgrss
    jgrss committed Apr 17, 2024
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  6. remove coordinate embedding

    @jgrss
    jgrss committed Apr 17, 2024
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  7. comment on dimensions

    @jgrss
    jgrss committed Apr 17, 2024
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  8. cleanup attention

    @jgrss
    jgrss committed Apr 17, 2024
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  9. create module dictionary

    @jgrss
    jgrss committed Apr 17, 2024
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  10. format

    @jgrss
    jgrss committed Apr 17, 2024
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  11. add properties

    @jgrss
    jgrss committed Apr 17, 2024
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  12. move skip

    @jgrss
    jgrss committed Apr 17, 2024
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  13. update outputs

    @jgrss
    jgrss committed Apr 17, 2024
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  14. change dictionary key name

    @jgrss
    jgrss committed Apr 17, 2024
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  15. format

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    jgrss committed Apr 17, 2024
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  16. replace dictionary with tensor

    @jgrss
    jgrss committed Apr 17, 2024
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  17. remove file

    @jgrss
    jgrss committed Apr 17, 2024
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  18. format

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    jgrss committed Apr 17, 2024
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Commits on Apr 20, 2024

  1. format

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    jgrss committed Apr 20, 2024
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Commits on Apr 21, 2024

  1. fix deleted method

    @jgrss
    jgrss committed Apr 21, 2024
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  2. format

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    jgrss committed Apr 21, 2024
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  3. format

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    jgrss committed Apr 21, 2024
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  4. deprecated scipy

    @jgrss
    jgrss committed Apr 21, 2024
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  5. add None check

    @jgrss
    jgrss committed Apr 21, 2024
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  6. update Dataset

    @jgrss
    jgrss committed Apr 21, 2024
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  7. add registers for collate

    @jgrss
    jgrss committed Apr 21, 2024
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  8. minor formatting

    @jgrss
    jgrss committed Apr 21, 2024
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  9. remove model tensor reshaping

    @jgrss
    jgrss committed Apr 21, 2024
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  10. rename args

    @jgrss
    jgrss committed Apr 21, 2024
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  11. network name changes

    @jgrss
    jgrss committed Apr 21, 2024
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  12. name changes

    @jgrss
    jgrss committed Apr 21, 2024
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  13. add keyword arg

    @jgrss
    jgrss committed Apr 21, 2024
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  14. move normalization method

    @jgrss
    jgrss committed Apr 21, 2024
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  15. update tests

    @jgrss
    jgrss committed Apr 21, 2024
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  16. convert to tensors

    @jgrss
    jgrss committed Apr 21, 2024
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  17. update README

    @jgrss
    jgrss committed Apr 21, 2024
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Commits on Apr 22, 2024

  1. remove unwanted

    @jgrss
    jgrss committed Apr 22, 2024
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  2. fix label bug

    @jgrss
    jgrss committed Apr 22, 2024
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  3. format

    @jgrss
    jgrss committed Apr 22, 2024
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  4. not using graph vars

    @jgrss
    jgrss committed Apr 22, 2024
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  5. use einops

    @jgrss
    jgrss committed Apr 22, 2024
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  6. remove commented

    @jgrss
    jgrss committed Apr 22, 2024
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Commits on Apr 23, 2024

  1. update precommit

    Ubuntu committed Apr 23, 2024
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  2. add isort

    Ubuntu committed Apr 23, 2024
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  3. update dependencies

    Ubuntu committed Apr 23, 2024
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  4. upgrade version

    Ubuntu committed Apr 23, 2024
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  5. format

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  6. format

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  7. format

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  8. remove file

    Ubuntu committed Apr 23, 2024
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  9. rename file

    Ubuntu committed Apr 23, 2024
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  10. format

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  11. format

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  12. add collater

    Ubuntu committed Apr 23, 2024
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  13. format

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  14. format

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  15. format

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  16. format

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  17. format

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  18. format

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  19. use nn.

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  20. format

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  21. format

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  22. format

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  23. format

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Commits on Apr 25, 2024

  1. format

    @jgrss
    jgrss committed Apr 25, 2024
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  2. update loss

    @jgrss
    jgrss committed Apr 25, 2024
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  3. fix dataset test

    @jgrss
    jgrss committed Apr 25, 2024
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  4. move to modules

    @jgrss
    jgrss committed Apr 25, 2024
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Commits on Apr 26, 2024

  1. pin changes

    @jgrss
    jgrss committed Apr 26, 2024
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  2. stash

    @jgrss
    jgrss committed Apr 26, 2024
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  3. run train session

    @jgrss
    jgrss committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. fix train data storage

    @jgrss
    jgrss committed Apr 29, 2024
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  2. add enum

    @jgrss
    jgrss committed Apr 29, 2024
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  3. change default transforms to None

    @jgrss
    jgrss committed Apr 29, 2024
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  4. change time series start/end get method

    @jgrss
    jgrss committed Apr 29, 2024
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  5. update script flow

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    jgrss committed Apr 29, 2024
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Commits on Apr 30, 2024

  1. add tower

    @jgrss
    jgrss committed Apr 30, 2024
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  2. add worker check

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    jgrss committed Apr 30, 2024
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  3. Merge branch 'jgrss/transfer_ltae' of github.com:jgrss/cultionet into… 

    … jgrss/transfer_ltae
    @jgrss
    jgrss committed Apr 30, 2024
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  4. implement

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    jgrss committed Apr 30, 2024
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  5. start on predict data

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    jgrss committed Apr 30, 2024
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Commits on May 1, 2024

  1. fix inference steps

    @jgrss
    jgrss committed May 1, 2024
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  2. replace deprecated

    @jgrss
    jgrss committed May 1, 2024
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  3. fix predict window

    @jgrss
    jgrss committed May 1, 2024
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Commits on May 2, 2024

  1. cleanup

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    jgrss committed May 2, 2024
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  2. set defaults

    @jgrss
    jgrss committed May 2, 2024
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  3. comment

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    jgrss committed May 2, 2024
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  4. comment

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    jgrss committed May 2, 2024
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  5. changes

    @jgrss
    jgrss committed May 2, 2024
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  6. add foj loss

    @jgrss
    jgrss committed May 2, 2024
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  7. add foj loss

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    jgrss committed May 2, 2024
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Commits on May 3, 2024

  1. fix dropout

    @jgrss
    jgrss committed May 3, 2024
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  2. cleanup params

    @jgrss
    jgrss committed May 3, 2024
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  3. cleanup transfer

    @jgrss
    jgrss committed May 3, 2024
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  4. cleanup args

    @jgrss
    jgrss committed May 3, 2024
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  5. fix deep supervision

    @jgrss
    jgrss committed May 3, 2024
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  6. fix deep supervision

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    jgrss committed May 3, 2024
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  7. need to update the spatial gpkg

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Commits on May 9, 2024

  1. update dependencies

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  2. add 0 check

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  3. add multipolygon method

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  4. add pool_first arg

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    jgrss committed May 9, 2024
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  5. add pool_first arg

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  6. add pool_first arg

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  7. add pool_first arg

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  8. add pool_first arg

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  9. remove args

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  10. script changes

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  11. add optional StdConv

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Commits on May 10, 2024

  1. add pyogrio

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  2. replace gw polygon_to_array

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  3. add CLI arg for unknown labels

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    jgrss committed May 10, 2024
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  4. make read method

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Commits on May 11, 2024

  1. update progress bars

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  2. fix augmentations

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  3. fix augmentations

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  4. fix augmentation bdist

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Commits on May 15, 2024

  1. add args

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  2. add args

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  3. transfer updates

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  4. move methods

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  5. move scale

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  6. pass conv args

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  7. move methods

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  8. move data methods

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  9. add module import

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  10. modfy CLI defaults

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  11. update create methods

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  12. replace tqdm with rich

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  13. add batch file store

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  14. remove old code

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Commits on May 16, 2024

  1. support weak supervision

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  2. fix tests

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    jgrss committed May 16, 2024
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Commits on May 17, 2024

  1. test mask-rcnn

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Commits on May 21, 2024

  1. stash

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Commits on May 22, 2024

  1. change conv args

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  2. change conv args

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  3. test zoom and support score masking

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    jgrss committed May 22, 2024
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  4. modify tower unet

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    jgrss committed May 22, 2024
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  5. change arg name

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    jgrss committed May 22, 2024
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  6. cleanup unused and add order option

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    jgrss committed May 22, 2024
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  7. cleanup unused and add order option

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    jgrss committed May 22, 2024
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  8. change CLI

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    jgrss committed May 22, 2024
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  9. update CLI args

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  10. update test

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  11. change module names

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Commits on May 23, 2024

  1. stash

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Commits on May 24, 2024

  1. stash

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Commits on May 26, 2024

  1. add temp exception

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  2. reconfigure resconv

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  3. remove files

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Commits on May 28, 2024

  1. modify transfer model

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  2. fix mask scoring

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    jgrss committed May 28, 2024
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  3. use transfer name

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  4. separate spatial splits

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  5. Merge branch 'jgrss/transfer_ltae_v2' of github.com:jgrss/cultionet i… 

    …nto jgrss/transfer_ltae_v2
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Commits on May 29, 2024

  1. add missing method

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  2. transfer loss

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  3. all_touched=True

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  4. add data methods

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  5. add edge check

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  6. Merge branch 'jgrss/transfer_ltae_v2' of ssh://github.com/jgrss/culti… 

    …onet into jgrss/transfer_ltae_v2
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  7. add transfer arg

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  8. finetune

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  9. re-test params

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Commits on Jun 10, 2024

  1. get utm zone from lat/lon

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    jgrss committed Jun 10, 2024
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  2. change time scaler param

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    jgrss committed Jun 10, 2024
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  3. pass activation param

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    jgrss committed Jun 10, 2024
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  4. experimental final layers

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Commits on Jun 14, 2024

  1. cleanuup refinee

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  2. start/end

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  3. enums

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  4. enums

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  5. topology loss

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    jgrss committed Jun 14, 2024
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  6. cleanup

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    jgrss committed Jun 14, 2024
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  7. test attention

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  8. vit

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  9. residual in residual

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  10. attention

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  11. remove CLI option

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  12. predict start/end

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  13. temp test

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  14. libraries

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Commits on Jun 20, 2024

  1. reconfigure augmentations

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Commits on Jun 26, 2024

  1. random rng support

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    jgrss committed Jun 26, 2024
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  2. simplify augmenter

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  3. add data check for geometry collection

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    jgrss committed Jun 26, 2024
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  4. augment probability handling

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    jgrss committed Jun 26, 2024
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  5. force new spatial data for transfer model

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    jgrss committed Jun 26, 2024
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  6. formatting

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  7. test new loss

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  8. move modules

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  9. move modules

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  10. move modules

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  11. profiler

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  12. module imports

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  13. docs: update README (#75)

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Commits on Jul 30, 2024

  1. feat: transfer ltae v2 (#76) 

    * update README

* remove import

* pass all_touched arg

* add lon/lat to data batch

* pass persistent workers arg

* 👕 formatting

* pass lon/lat coordinates

* cleanup loss

* rename network names

* remove ViT

* try/except import natten

* 👕 formatting

* pass all_touched from CLI

* add all_touched CLI arg
    @jgrss
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Commits on Jul 31, 2024

  1. fix: torch20 tests (#77) 

    * 🔨 modify CI workflow

* ⚡ remove install line

* ⚡ update augmentation test names

* 📝 update torch version in README

* 🔨 modify CI workflow

* 🔨 setup lib requirements

* update augmentation tests

* ⚡ update data tests

* ⚡ update data tests

* ⚡ better einops characters

* 👕 formatting

* ➕ raise minimum torchmetrics version

* 🎨 formatting
    @jgrss
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  2. fix: remove instances of torch_geometric (#78)

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  3. fix: test batch save step (#80)

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  4. docs: torch20 docs (#79) 

    * 📝 update README

* 📝 add sub-md

* 📝 add install line

* 📝 remove line

* 📝 better comments

* 📝 add README links
    @jgrss
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  5. fix: torch20 cleanup (#81) 

    * 🗑️ remove redundant method

* 🎨 formatting

* 🔥 py3 super() and remove unused methods

* ✅ add tests for transformer

* 🎨 formatting

* ✅ add tests for tower unet

* 🎨 formatting

* 🔥 remove FOJ

* 🔥 py3 super() and remove unused methods

* 🎨 formatting

* 🔥 py3 super() and remove unused methods
    @jgrss
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  6. fix: add fiona dependency (#82)

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    jgrss authored Jul 31, 2024
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  7. fix: use cpu device (#83)

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    jgrss authored Jul 31, 2024
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  8. 🐛 add supported attention

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  9. 🐛 revert attention

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  10. 🐛✅ attention tests

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  11. 🙈 hide test for now

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  12. fix: torch20 train test (#84) 

    * ✏️  change variable name

* 🎨 formatting
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  13. ✅ test other weights

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Commits on Aug 1, 2024

  1. 🙈 block train CLI test

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  2. fix: torch20 network c (#85) 

    * 🔥 remove network c module

* 🎨 formatting
    @jgrss
    jgrss authored Aug 1, 2024
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Commits on Aug 14, 2024

  1. torch20 transfer (#86) 

    * 🎨 formatting

* 🔥 remove gain from dask storage

* 🎨 formatting

* 🎨 formatting

* ⚡️ change CLI defaults

* ✨ new loss enum

* ⚡️ relative import

* ✅ update tests

* 🔒️ upgrade setuptools
    @jgrss
    jgrss authored Aug 14, 2024
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Commits on Aug 15, 2024

  1. fix: torch20 ex (#87) 

    * ⚡️ sum weights

* ⚡️ move sum

* ✅ update loss tests

* 🎨 formatting

* ⚡️ use common method

* 🎨 formatting

* ➖ make kornia optional

* ➕ increase dependency versions
    @jgrss
    jgrss authored Aug 15, 2024
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  2. ➖ cleanup imports

    @jgrss
    jgrss committed Aug 15, 2024
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  3. fix: ➖ remove boundary loss (#88)

    @jgrss
    jgrss authored Aug 15, 2024
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  4. ➖ remove topology loss

    @jgrss
    jgrss committed Aug 15, 2024
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