Comparative Genomics and Metagenomics
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CBGP (UPM-INIA/CSIC)
- Madrid - Spain
- cgmalab.org
- @jhcepas
Highlights
- Pro
Pinned Loading
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etetoolkit/ete
etetoolkit/ete PublicPython package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …
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eggnogdb/eggnog-mapper
eggnogdb/eggnog-mapper PublicFast genome-wide functional annotation through orthology assignment
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eggnogdb/emapper-benchmark
eggnogdb/emapper-benchmark PublicRaw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.
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etetoolkit/treematcher
etetoolkit/treematcher PublicSearch flexible patterns within tree structures using regular expression like syntax.
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test_branch_support_after_tree_rerooting
test_branch_support_after_tree_rerooting PublicAdditional test cases of branch support rearrangements after tree re-rooting inspired by http://biorxiv.org/content/early/2015/12/25/035360 (APE, dendropy, biopython, ete3, newick-utilities, bioperl)
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