Merge branch 'main' of https://github.com/jhudsl/AnVIL_Template into …

…main

docs/02-chapter_of_course.md

@@ -219,7 +219,7 @@ devtools::session_info()
 ##  collate  en_US.UTF-8                 
 ##  ctype    en_US.UTF-8                 
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-##  date     2023-04-18                  
+##  date     2023-05-12                  
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 ##  package     * version date       lib source                            

docs/12-instructor_modules.md

@@ -36,25 +36,36 @@ Here is a [checklist](https://docs.google.com/document/d/1-HqQqH_qlkHwRua8-b92My
 
 **1+ month before:**
 
-- Figure out how you will fund the class/workshop
+- Figure out how you will fund the class/workshop.
 - Start working through INSTRUCTOR SETUP.
-    - It's a good idea to get billing figured out with plenty of time to spare
+    - It's a good idea to get billing figured out with plenty of time to spare.
     - Take some time to familiarize yourself with the content and make any desired updates or customizations.
-- Do any necessary EVENT SETUP steps
+- Do any necessary EVENT SETUP steps.
 
 **~1 week before:**
 
-- Start working through RUNNING THE CLASS
+- Start working through RUNNING THE CLASS.
 - If possible, have students log in to AnVIL and send you their usernames, so you can add them to the Student Group ahead of time.  This saves time on the day of the class.
 - **Do not add students to your Billing Project** ahead of time.  This prevents them from accruing costs.
 
 **Day of (or shortly before):** 
 
-- Add students to Billing Project
-- Have students clone the Workspace (They cannot do this until you have added them to the Billing Project.  As soon as they do this, they can start computing.)
+- Add students to Billing Project.
+- Have students clone the Workspace (They cannot do this until you have added them to the Billing Project.  As soon as they do this, they can start computing.).
 
 **After:**
 
-- Collect feedback, if you didn't do it during the class/workshop
-- Work though EVENT WRAP-UP - **until you shut things down, you will continue to accrue costs**
+- Collect feedback, if you didn't do it during the class/workshop.
+- Work though EVENT WRAP-UP - **until you shut things down, you will continue to accrue costs**.
+::::
+
+## Recommendation to use STRIDES
+
+:::: {.borrowed_chunk}
+
+If you are new to AnVIL, **we strongly recommend seeking funding through NHGRI / STRIDES for teaching your course**.  In order to prevent abuse, Google sets certain limits on cloud resources available to new users that can complicate teaching (e.g. [project quotas](https://support.terra.bio/hc/en-us/articles/6101030164507-When-workspace-creation-fails-Google-project-quotas)).  As you or your institution builds a payment history with Google, the limits on your accounts will be relaxed.  In the meantime, STRIDES funding can help ensure your initial classes run smoothly.
+
+**What is STRIDES?**  NHGRI's [strategic vision](https://pubmed.ncbi.nlm.nih.gov/33116284/) highlights the importance of training the next generation of genomic scientists.  In collaboration with the NIH Office of Data Science Strategy, NHGRI makes funding available to AnVIL users through the [STRIDES](https://datascience.nih.gov/strides) program, which aims to promote biological research in cloud environments. 
+
+**To inquire about funding your class on AnVIL, please contact help@lists.anvilproject.org.**
 ::::

docs/404.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>

docs/About.md

@@ -53,7 +53,7 @@ These credits are based on our [course contributors table guidelines](https://gi
 ##  collate  en_US.UTF-8                 
 ##  ctype    en_US.UTF-8                 
 ##  tz       Etc/UTC                     
-##  date     2023-04-18                  
+##  date     2023-05-12                  
 ## 
 ## ─ Packages ───────────────────────────────────────────────────────────────────
 ##  package     * version date       lib source                            

docs/a-new-chapter.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>
@@ -468,7 +469,7 @@ <h2><span class="header-section-number">2.4</span> Print out session info</h2>
 ##  collate  en_US.UTF-8                 
 ##  ctype    en_US.UTF-8                 
 ##  tz       Etc/UTC                     
-##  date     2023-04-18                  
+##  date     2023-05-12                  
 ## 
 ## ─ Packages ───────────────────────────────────────────────────────────────────
 ##  package     * version date       lib source                            

docs/about-the-authors.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>
@@ -450,7 +451,7 @@ <h1>About the Authors</h1>
 ##  collate  en_US.UTF-8                 
 ##  ctype    en_US.UTF-8                 
 ##  tz       Etc/UTC                     
-##  date     2023-04-18                  
+##  date     2023-05-12                  
 ## 
 ## ─ Packages ───────────────────────────────────────────────────────────────────
 ##  package     * version date       lib source                            

docs/anvil-module-library.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>

docs/billing.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>

docs/index.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>
@@ -309,7 +310,7 @@ <h1>
 </div>
 <div id="header">
 <h1 class="title">AnVIL Book Name</h1>
-<p class="date"><em>April 18, 2023</em></p>
+<p class="date"><em>May 12, 2023</em></p>
 </div>
 <div id="about-this-book" class="section level1 unnumbered">
 <h1>About this Book</h1>

docs/index.md

@@ -1,6 +1,6 @@
 ---
 title: "AnVIL Book Name"
-date: "April 18, 2023"
+date: "May 12, 2023"
 site: bookdown::bookdown_site
 documentclass: book
 bibliography: book.bib

docs/instructor-modules.html

@@ -23,7 +23,7 @@
 
 
 
-<meta name="date" content="2023-04-18" />
+<meta name="date" content="2023-05-12" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -270,6 +270,7 @@
 <li class="chapter" data-level="11.1" data-path="instructor-modules.html"><a href="instructor-modules.html#why-anvil-for-instructors-1"><i class="fa fa-check"></i><b>11.1</b> Why AnVIL for Instructors?</a></li>
 <li class="chapter" data-level="11.2" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-link"><i class="fa fa-check"></i><b>11.2</b> Checklist Link</a></li>
 <li class="chapter" data-level="11.3" data-path="instructor-modules.html"><a href="instructor-modules.html#checklist-timeline-premade-content"><i class="fa fa-check"></i><b>11.3</b> Checklist Timeline (premade content)</a></li>
+<li class="chapter" data-level="11.4" data-path="instructor-modules.html"><a href="instructor-modules.html#recommendation-to-use-strides"><i class="fa fa-check"></i><b>11.4</b> Recommendation to use STRIDES</a></li>
 </ul></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="12" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>12</b> References</a></li>
@@ -340,31 +341,39 @@ <h2><span class="header-section-number">11.3</span> Checklist Timeline (premade
 <div class="borrowed_chunk">
 <p><strong>1+ month before:</strong></p>
 <ul>
-<li>Figure out how you will fund the class/workshop</li>
+<li>Figure out how you will fund the class/workshop.</li>
 <li>Start working through INSTRUCTOR SETUP.
 <ul>
-<li>It’s a good idea to get billing figured out with plenty of time to spare</li>
+<li>It’s a good idea to get billing figured out with plenty of time to spare.</li>
 <li>Take some time to familiarize yourself with the content and make any desired updates or customizations.</li>
 </ul></li>
-<li>Do any necessary EVENT SETUP steps</li>
+<li>Do any necessary EVENT SETUP steps.</li>
 </ul>
 <p><strong>~1 week before:</strong></p>
 <ul>
-<li>Start working through RUNNING THE CLASS</li>
+<li>Start working through RUNNING THE CLASS.</li>
 <li>If possible, have students log in to AnVIL and send you their usernames, so you can add them to the Student Group ahead of time. This saves time on the day of the class.</li>
 <li><strong>Do not add students to your Billing Project</strong> ahead of time. This prevents them from accruing costs.</li>
 </ul>
 <p><strong>Day of (or shortly before):</strong></p>
 <ul>
-<li>Add students to Billing Project</li>
-<li>Have students clone the Workspace (They cannot do this until you have added them to the Billing Project. As soon as they do this, they can start computing.)</li>
+<li>Add students to Billing Project.</li>
+<li>Have students clone the Workspace (They cannot do this until you have added them to the Billing Project. As soon as they do this, they can start computing.).</li>
 </ul>
 <p><strong>After:</strong></p>
 <ul>
-<li>Collect feedback, if you didn’t do it during the class/workshop</li>
-<li>Work though EVENT WRAP-UP - <strong>until you shut things down, you will continue to accrue costs</strong></li>
+<li>Collect feedback, if you didn’t do it during the class/workshop.</li>
+<li>Work though EVENT WRAP-UP - <strong>until you shut things down, you will continue to accrue costs</strong>.</li>
 </ul>
 </div>
+</div>
+<div id="recommendation-to-use-strides" class="section level2" number="11.4">
+<h2><span class="header-section-number">11.4</span> Recommendation to use STRIDES</h2>
+<div class="borrowed_chunk">
+<p>If you are new to AnVIL, <strong>we strongly recommend seeking funding through NHGRI / STRIDES for teaching your course</strong>. In order to prevent abuse, Google sets certain limits on cloud resources available to new users that can complicate teaching (e.g. <a href="https://support.terra.bio/hc/en-us/articles/6101030164507-When-workspace-creation-fails-Google-project-quotas">project quotas</a>). As you or your institution builds a payment history with Google, the limits on your accounts will be relaxed. In the meantime, STRIDES funding can help ensure your initial classes run smoothly.</p>
+<p><strong>What is STRIDES?</strong> NHGRI’s <a href="https://pubmed.ncbi.nlm.nih.gov/33116284/">strategic vision</a> highlights the importance of training the next generation of genomic scientists. In collaboration with the NIH Office of Data Science Strategy, NHGRI makes funding available to AnVIL users through the <a href="https://datascience.nih.gov/strides">STRIDES</a> program, which aims to promote biological research in cloud environments.</p>
+<p><strong>To inquire about funding your class on AnVIL, please contact <a href="mailto:help@lists.anvilproject.org" class="email">help@lists.anvilproject.org</a>.</strong></p>
+</div>
 
 </div>
 </div>