Merge 4a7ecfd into 8ecbda9

.github/workflows/check-quizzes.yml

@@ -1,16 +1,15 @@
-
 # Candace Savonen Jan 2022
 
 name: Check Leanpub Quizzes
 
+#---TRIGGER-START---#
 on:
   workflow_dispatch:
-### UNCOMMENT THIS SECTION IF YOU WISH PREPARE YOUR COURSE QUIZZES FOR LEANPUB AUTOMATICALLY
-#  pull_request:
-#    branches: [ main, staging]
-#    paths:
-#      - 'quizzes/*'
-######### END OF SECTION #########
+    pull_request:
+      branches: [ main, staging ]
+      paths:
+        - 'quizzes/*'
+#---TRIGGER-END----#
 
 jobs:
   check-quizzes:

.github/workflows/delete-preview.yml

@@ -2,12 +2,14 @@
 
 name: Delete Preview
 
+#---TRIGGER-START---#
 on:
   pull_request:
     types: [closed]
+#---TRIGGER-END---#
 
 jobs:
-  build-all:
+  delete-preview:
     runs-on: ubuntu-latest
     steps:
 

.github/workflows/docker-build-test.yml

@@ -1,41 +1,33 @@
-# This code was originally written by Josh Shapiro
-# for the Childhood Cancer Data Lab, an initiative of Alexs Lemonade Stand Foundation.
-# https://github.com/AlexsLemonade/refinebio-examples/blob/33cdeff66d57f9fe8ee4fcb5156aea4ac2dce07f/.github/workflows/style-and-sp-check.yml#L1
+# Candace Savonen Apr 2021
 
-# Adapted for this jhudsl repository by Candace Savonen Apr 2021
+name: Build of Docker
 
-name: Test build of Dockerfile
 
-# Controls when the action will run. Triggers the workflow for a pull request for
-# master
+#---TRIGGER-START---#
 on:
   release:
     types:
       - created
   pull_request:
-    branches:
-      - 'main'
+    branches: [ main, staging ]
     paths: [ docker/Dockerfile, docker/github_package_list.tsv ]
   workflow_dispatch:
     inputs:
       dockerhubpush:
         description: 'Push to Dockerhub?'
         required: true
         default: 'false'
+#---TRIGGER-END----#
 
-# A workflow run is made up of one or more jobs that can run sequentially or in parallel
 jobs:
-  # This workflow contains a single job called "build"
-  build:
-    # The type of runner that the job will run on
+  build-docker:
     runs-on: ubuntu-latest
 
-    # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
       - name: checkout repo
         uses: actions/checkout@v2
 
-      - name: login as jhudsl-robot
+      - name: Login as jhudsl-robot
         run: |
           git config --local user.email "itcrtrainingnetwork@gmail.com"
           git config --local user.name "jhudsl-robot"

.github/workflows/release-notes.yml

@@ -2,10 +2,12 @@
 
 name: Release note PR comment
 
+#---TRIGGER-START---#
 on:
   pull_request:
-    branches: [ main ]
+    branches: [ main, staging ]
     types: [ opened ]
+#---TRIGGER-END----#
 
 jobs:
   pr-comment:

.github/workflows/render-bookdown.yml

@@ -1,72 +1,36 @@
 
-# This code was originally written by Josh Shapiro and Candace Savonen
-# for the Childhood Cancer Data Lab, an initiative of Alexs Lemonade Stand Foundation.
-# https://github.com/AlexsLemonade/refinebio-examples/blob/33cdeff66d57f9fe8ee4fcb5156aea4ac2dce07f/.github/workflows/style-and-sp-check.yml#L1
+# Candace Savonen Apr 2021
 
-# Adapted for this jhudsl repository by Candace Savonen Apr 2021
+name: Render Bookdown
 
-name: Render Bookdown and Coursera
-
-# Controls when the action will run. Triggers the workflow on push
-# events only for the master branch
+#---TRIGGER-START---#
 on:
   workflow_dispatch:
   push:
-    branches: [ main ]
+    branches: [ main, staging ]
     paths:
       - '**.Rmd'
-      - docker/*
       - assets/*
+#---TRIGGER-END----#
+
 jobs:
-  # This workflow contains a single job called "build-all"
-  render-main:
+  render-bookdown:
     runs-on: ubuntu-latest
+    container:
+      image: jhudsl/course_template
 
-    # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
-      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
       - name: checkout
         uses: actions/checkout@v2
         with:
-          # get the full repo
           fetch-depth: 0
-          # use github PAT
           token: ${{ secrets.GH_PAT }}
 
-###### If you will be making changes to the Docker image to make specific to the
-###### course, then highlight this chunk and uncomment it. #####################
-###### Recommend using short cut -- Command and / works for some editors.#######
-###### START OF DOCKER UPDATE CHUNK
-      # # Login to Dockerhub
-      # - name: Login to DockerHub
-      #   uses: docker/login-action@v1
-      #   with:
-      #     username: ${{ secrets.DOCKERHUB_USERNAME }}
-      #     password: ${{ secrets.DOCKERHUB_TOKEN }}
-      #
-      # # Set up Docker build
-      # - name: Set up Docker Build
-      #   uses: docker/setup-buildx-action@v1
-      #
-      # - name: Get Token
-      #   run: echo ${{ secrets.GH_PAT }} > docker/git_token.txt
-      #
-      # # Build docker image
-      # - name: Build Docker image
-      #   uses: docker/build-push-action@v2
-      #   with:
-      #     push: false
-      #     load: true
-      #     context: docker
-      #     file: docker/Dockerfile
-      #     tags: jhudsl/course_template
-      #
-      # # Push the Docker image
-      # - name: Push Docker image
-      #   run: docker push jhudsl/course_template
-
-###### END OF DOCKER UPDATE CHUNK ##############################################
-
+      - name: Login as jhudsl-robot
+        run: |
+          git config --local user.email "itcrtrainingnetwork@gmail.com"
+          git config --local user.name "jhudsl-robot"
+          
       # We want a fresh run of the renders each time
       - name: Delete old docs/*
         run: rm -r docs/*
@@ -75,33 +39,15 @@ jobs:
       - name: Run bookdown render
         id: bookdown
         run: |
-          docker run \
-          --mount type=bind,target=/home/rstudio,source=$PWD \
-          --user "$(id -u):$(id -g)" \
-          jhudsl/course_template \
           Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all');
           file.copy(from = 'assets', to = 'docs/assets', overwrite = TRUE)"
 
-##### If you do not wish to host your course on Coursera, you can delete this section #####
-      # Run Coursera version
-      - name: Run Coursera version of render
-        id: coursera
-        run: |
-          docker run \
-          --mount type=bind,target=/home/rstudio,source=$PWD \
-          --user "$(id -u):$(id -g)" \
-          jhudsl/course_template \
-          Rscript -e "ottr::render_coursera()"
-
-##### End of Coursera rendering section ########################################
-
       # This checks on the steps before it and makes sure that they completed.
       # If the renders didn't complete we don't want to commit the file changes
-      - name: Check on render steps
-        if: steps.bookdown.outcome != 'success' || steps.coursera.outcome != 'success'
+      - name: Check on render step
+        if: steps.bookdown.outcome != 'success'
         run: |
           echo Bookdown status ${{steps.bookdown.outcome}}
-          echo Coursera status ${{steps.coursera.outcome}}
           exit 1
 
       # Commit the rendered bookdown files

.github/workflows/render-coursera.yml

@@ -0,0 +1,54 @@
+
+# Candace Savonen Apr 2021
+
+name: Render Coursera
+
+#---TRIGGER-START---#
+on:
+  workflow_dispatch:
+  workflow_run:
+    workflows: [ "Render Bookdown" ]
+    branches: [ main, staging ]
+    types:
+      - completed
+#---TRIGGER-END----#
+
+jobs:
+  render-coursera:
+    runs-on: ubuntu-latest
+    container:
+      image: jhudsl/course_template
+
+    steps:
+      - name: checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+          token: ${{ secrets.GH_PAT }}
+
+      - name: Login as jhudsl-robot
+        run: |
+          git config --local user.email "itcrtrainingnetwork@gmail.com"
+          git config --local user.name "jhudsl-robot"
+          
+      # Run Coursera version
+      - name: Run Coursera version of render
+        id: coursera
+        run: Rscript -e "ottr::render_coursera(convert_quizzes = TRUE)"
+
+      # This checks on the steps before it and makes sure that they completed.
+      # If the renders didn't complete we don't want to commit the file changes
+      - name: Check on render steps
+        if: steps.coursera.outcome != 'success'
+        run: |
+          echo Coursera status ${{steps.coursera.outcome}}
+          exit 1
+
+      # Commit the rendered bookdown files
+      - name: Commit rendered Coursera files
+        run: |
+          git config --local user.email "actions@github.com"
+          git config --local user.name "GitHub Actions"
+          git add --force docs/coursera/*
+          git commit -m 'Render Coursera' || echo "No changes to commit"
+          git push origin main || echo "No changes to push"

.github/workflows/render-leanpub.yml

@@ -1,59 +1,54 @@
 
 # Jan 2022 Candace Savonen
 
-name: Render and publish Leanpub
+name: Render Leanpub
 
+#---TRIGGER-START---#
 on:
   workflow_dispatch:
-### UNCOMMENT THIS SECTION IF YOU WISH PREPARE YOUR COURSE FOR LEANPUB AUTOMATICALLY
-    # workflows: [ "Render Bookdown and Coursera" ]
-    # branches: [ main ]
-    # types:
-    #   - completed
-    # paths:
-    #   - '**.Rmd'
-    #   - docker/*
-    #   - assets/*
-    #   - quizzes/*
-######### END OF SECTION #########
+  workflow_run:
+    workflows: [ "Render Coursera" ]
+    branches: [ main, staging ]
+    types:
+      - completed
+#---TRIGGER-END----#
 
 jobs:
-  # This workflow contains a single job called "build-all"
-  render-main:
+  render-leanpub:
     runs-on: ubuntu-latest
     container:
       image: jhudsl/ottr
 
-    # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
-      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
       - name: checkout
         uses: actions/checkout@v2
         with:
-          # get the full repo
           fetch-depth: 0
-          # use github PAT
           token: ${{ secrets.GH_PAT }}
 
-      # Run leanpub rendering
+      - name: Login as jhudsl-robot
+        run: |
+          git config --local user.email "itcrtrainingnetwork@gmail.com"
+          git config --local user.name "jhudsl-robot"
+          
+      # Create screenshots
       - name: Run the screenshot creation
         run: |
           chapt_urls=$(Rscript --vanilla scripts/make_screenshots.R \
             --git_pat ${{ secrets.GH_PAT }} \
             --repo $GITHUB_REPOSITORY)
 
+      # We want a fresh run of the renders each time
+      - name: Delete old manuscript/
+        run: rm -rf manuscript/
+
       # Run Leanpub rendering
       - name: Run ottr::bookdown_to_embed_leanpub
         run: |
-          rm -rf manuscript
           Rscript -e "ottr::bookdown_to_embed_leanpub( \
             chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \
             make_book_txt = TRUE)"
 
-      # Convert quizzes to Coursera format
-      - name: Convert quizzes to coursera
-        run: Rscript -e "ottr::render_coursera(convert_quizzes = TRUE)"
-
       # Commit the rendered leanpub files
       - name: Commit rendered leanpub files
         run: |