add comments to stochastic physics stub

config_src/drivers/nuopc_cap/mom_ocean_model_nuopc.F90

@@ -179,7 +179,7 @@ module MOM_ocean_model_nuopc
                               !! processes before time stepping the dynamics.
   logical :: do_sppt         !< If true, stochastically perturb the diabatic and
                              !! write restarts
-  logical :: pert_epbl       !< If true, then randomly perturb the KE dissipation and 
+  logical :: pert_epbl       !< If true, then randomly perturb the KE dissipation and
                              !! genration termsand write restarts
 
   real :: eps_omesh           !< Max allowable difference between ESMF mesh and MOM6

config_src/external/stochastic_physics/stochastic_physics.F90

@@ -16,12 +16,17 @@ module stochastic_physics
 subroutine init_stochastic_physics_ocn(delt,geoLonT,geoLatT,nx,ny,nz,pert_epbl_in,do_sppt_in, &
                                        mpiroot, mpicomm, iret)
 implicit none
-real,intent(in)  :: delt
-integer,intent(in) :: nx,ny,nz
-real,intent(in) :: geoLonT(nx,ny),geoLatT(nx,ny)
-logical,intent(in) :: pert_epbl_in,do_sppt_in
-integer,intent(in)    :: mpiroot, mpicomm
-integer, intent(out) :: iret
+real,intent(in)       :: delt !< timestep in seconds between calls to run_stochastic_physics_ocn
+integer,intent(in)    :: nx   !< number of gridpoints in the x-direction of the compute grid
+integer,intent(in)    :: ny   !< number of gridpoints in the y-direction of the compute grid
+integer,intent(in)    :: nz   !< number of gridpoints in the z-direction of the compute grid
+real,intent(in)       :: geoLonT(nx,ny) !< Longitude in degrees
+real,intent(in)       :: geoLatT(nx,ny) !< Latitude in degrees
+logical,intent(in)    :: pert_epbl_in !< logical flag, if true generate random pattern for ePBL perturbations
+logical,intent(in)    :: do_sppt_in   !< logical flag, if true generate random pattern for SPPT perturbations
+integer,intent(in)    :: mpiroot !< root processor
+integer,intent(in)    :: mpicomm !< mpi communicator
+integer, intent(out)  :: iret    !< return code
 
 iret=0
 if (pert_epbl_in .EQV. .true. ) then
@@ -37,7 +42,11 @@ end subroutine init_stochastic_physics_ocn
 
 subroutine run_stochastic_physics_ocn(sppt_wts,t_rp1,t_rp2)
 implicit none
-real, intent(inout) :: sppt_wts(:,:),t_rp1(:,:),t_rp2(:,:)
+real, intent(inout) :: sppt_wts(:,:) !< array containing random weights for SPPT range [0,2]
+real, intent(inout) :: t_rp1(:,:)    !< array containing random weights for ePBL
+                                     !! perturbations (KE generation) range [0,2]
+real, intent(inout) :: t_rp2(:,:)    !< array containing random weights for ePBL
+                                     !! perturbations (KE dissipation) range [0,2]
 return
 end subroutine run_stochastic_physics_ocn
 
@@ -52,7 +61,7 @@ module get_stochy_pattern_mod
 contains
 subroutine write_stoch_restart_ocn(sfile)
 
-character(len=*) :: sfile
+character(len=*) :: sfile   !< name of restart file
 return
 end subroutine write_stoch_restart_ocn
 

src/parameterizations/stochastic/MOM_stochastics.F90

@@ -59,7 +59,7 @@ subroutine stochastics_init(dt, grid, GV, CS, param_file, diag, Time)
   integer :: num_procs         ! number of processors to pass to stochastic physics
   integer :: iret              ! return code from stochastic physics
   integer :: me                !  my pe
-  integer :: master            !  root pe
+  integer :: pe_zero           !  root pe
   integer :: nx                ! number of x-points including halo
   integer :: ny                ! number of x-points including halo
 
@@ -95,11 +95,11 @@ subroutine stochastics_init(dt, grid, GV, CS, param_file, diag, Time)
      num_procs=num_PEs()
      allocate(pelist(num_procs))
      call Get_PElist(pelist,commID = mom_comm)
-     master=root_PE()
+     pe_zero=root_PE()
      nx = grid%ied - grid%isd + 1
      ny = grid%jed - grid%jsd + 1
      call init_stochastic_physics_ocn(dt,grid%geoLonT,grid%geoLatT,nx,ny,GV%ke, &
-                                      CS%pert_epbl,CS%do_sppt,master,mom_comm,iret)
+                                      CS%pert_epbl,CS%do_sppt,pe_zero,mom_comm,iret)
      if (iret/=0)  then
          call MOM_error(FATAL, "call to init_stochastic_physics_ocn failed")
          return