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| .DS_Store | ||
| *~ | ||
| *.iml | ||
| .idea/ |
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| # Referenced from: | ||
| # https://docs.github.com/en/code-security/dependabot/working-with-dependabot/keeping-your-actions-up-to-date-with-dependabot | ||
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| version: 2 | ||
| updates: | ||
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| - package-ecosystem: "github-actions" | ||
| directory: "/" | ||
| schedule: | ||
| interval: "weekly" |
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| name: "Publish Docker Image" | ||
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| on: | ||
| push: | ||
| tags: | ||
| - "**" | ||
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| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash -l -e -o pipefail {0} | ||
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| env: | ||
| IMAGE_NAME: p4 | ||
| REPOSITORY_OWNER: ${{ github.repository_owner }} | ||
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| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
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| - name: "Fetch Tags" | ||
| # Workaround for https://github.com/actions/checkout/issues/290 | ||
| run: git fetch --tags --force | ||
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| - name: "Get release variables" | ||
| # RELEASE_VERSION assignment must match the command used in autoconf's | ||
| # configure.ac file. On update, care should be taken to maintain both | ||
| # sides congruent. | ||
| run: | | ||
| echo 'RELEASE_VERSION='$(git describe --always --tags --dirty) >> $GITHUB_ENV | ||
| echo 'GIT_URL='$(git remote get-url origin) >> $GITHUB_ENV | ||
| echo 'GIT_COMMIT='$(git log --pretty=format:'%H' -n 1) >> $GITHUB_ENV | ||
| - name: "Login to Docker registry" | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| registry: ghcr.io | ||
| username: ${{ github.repository_owner }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
|
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| - name: "Build Docker image" | ||
| run: | | ||
| docker build --rm \ | ||
| --file Dockerfile \ | ||
| --platform linux/amd64 \ | ||
| --progress plain \ | ||
| --load \ | ||
| --label "org.opencontainers.image.title=${IMAGE_NAME}" \ | ||
| --label "org.opencontainers.image.source=${GIT_URL}" \ | ||
| --label "org.opencontainers.image.revision=${GIT_COMMIT}" \ | ||
| --label "org.opencontainers.image.version=${RELEASE_VERSION}" \ | ||
| --label "org.opencontainers.image.created=$(date --utc --iso-8601=seconds)" \ | ||
| --label "org.opencontainers.image.vendor=npg.sanger.ac.uk" \ | ||
| --tag "ghcr.io/${REPOSITORY_OWNER}/${IMAGE_NAME}:${RELEASE_VERSION}" \ | ||
| --tag "ghcr.io/${REPOSITORY_OWNER}/${IMAGE_NAME}:latest" \ | ||
| . | ||
| - name: "Push Docker image to registry" | ||
| run: | | ||
| docker push "ghcr.io/$REPOSITORY_OWNER/$IMAGE_NAME:$RELEASE_VERSION" | ||
| docker push "ghcr.io/$REPOSITORY_OWNER/$IMAGE_NAME:latest" |
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| name: testing_and_building_repo | ||
| on: [push, pull_request] | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| name: Distribution Perl on ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
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| # Caching cpanm external modules | ||
| - name: Cache cpanm external modules | ||
| id: cpanmCache | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: ~/perl5ext | ||
| key: ${{ runner.os }}-build-cpanm-external | ||
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| - name: install cpanm | ||
| run: | | ||
| wget -qO - https://cpanmin.us | /usr/bin/perl - --sudo App::cpanminus | ||
| # run the perl install script | ||
| - name: install NPG Perl dependencies, and their CPAN dependencies | ||
| run: | | ||
| cpanm --local-lib=~/perl5ext local::lib && eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib) | ||
| ${GITHUB_WORKSPACE}/scripts/install_npg_perl_dependencies.sh $WTSI_NPG_GITHUB_URL $WTSI_NPG_BUILD_BRANCH | ||
| env: | ||
| WTSI_NPG_GITHUB_URL: https://github.com/wtsi-npg | ||
| WTSI_NPG_BUILD_BRANCH: ${GITHUB_HEAD_REF} | ||
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| - name: install cpanm dependencies | ||
| run: | | ||
| eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5npg) | ||
| eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5ext) | ||
| cpanm --installdeps --notest . | ||
| - name: run Build.PL and ./Build | ||
| run: | | ||
| eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5ext) | ||
| eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5npg) | ||
| export TEST_AUTHOR=1 | ||
| perl Build.PL | ||
| ./Build test --verbose | ||
| ./Build install | ||
| # running ./Build dist and exporting files | ||
| - name: run ./Build dist | ||
| run: | | ||
| eval $(perl -I ~/perl5ext/lib/perl5/ -Mlocal::lib=~/perl5ext) | ||
| export TEST_AUTHOR=1 | ||
| ./Build dist | ||
| export DIST_FILE=$(ls p4-*.tar.gz) | ||
| export MD5_FILE=$DIST_FILE.md5 | ||
| md5sum $DIST_FILE > $MD5_FILE | ||
| export SHA256_FILE=$DIST_FILE.sha256 | ||
| shasum -a 256 $DIST_FILE > $SHA256_FILE | ||
| # Archive logs if failure | ||
| - name: Archive CPAN logs | ||
| if: ${{ failure() }} | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: cpan_log | ||
| path: /home/runner/.cpanm/work/*/build.log | ||
| retention-days: 5 |
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