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Make use of posix_memalign for hfile buffer. Windows/MinGW-W64 CI #91: Commit d1be3c2 pushed by jkbonfield
November 18, 2024 09:24 5m 12s bgzip_blk_size
bgzip_blk_size
November 18, 2024 09:24 5m 12s
Make use of posix_memalign for hfile buffer. Windows/MinGW-W64 CI #90: Commit 63e1a18 pushed by jkbonfield
November 14, 2024 12:40 5m 4s bgzip_blk_size
bgzip_blk_size
November 14, 2024 12:40 5m 4s
Add an hts_crc32 function to use zlib or libdeflate. Windows/MinGW-W64 CI #89: Commit 65e5239 pushed by jkbonfield
October 31, 2024 17:02 5m 9s hts_crc32
hts_crc32
October 31, 2024 17:02 5m 9s
Increase the input block size for bgzip. Windows/MinGW-W64 CI #88: Commit 186d21b pushed by jkbonfield
October 31, 2024 16:51 4m 33s bgzip_blk_size
bgzip_blk_size
October 31, 2024 16:51 4m 33s
Fix threaded sam_read1 after EOF. Windows/MinGW-W64 CI #87: Commit 18e4e1f pushed by jkbonfield
October 31, 2024 15:19 4m 51s fix_1855
fix_1855
October 31, 2024 15:19 4m 51s
Increase the input block size for bgzip. Windows/MinGW-W64 CI #86: Commit fdd6143 pushed by jkbonfield
October 30, 2024 09:33 4m 41s bgzip_blk_size
bgzip_blk_size
October 30, 2024 09:33 4m 41s
Convert U to T instead of U to N when sam_parsing. Windows/MinGW-W64 CI #85: Commit c2db2ab pushed by jkbonfield
October 24, 2024 09:01 4m 52s UtoT
UtoT
October 24, 2024 09:01 4m 52s
Fix issue created in PR#1848 Windows/MinGW-W64 CI #84: Commit 4c1acb8 pushed by jkbonfield
October 16, 2024 10:37 4m 37s fix_1848
fix_1848
October 16, 2024 10:37 4m 37s
Fix issue created in PR#1848 Windows/MinGW-W64 CI #83: Commit e9cb3d6 pushed by jkbonfield
October 16, 2024 09:31 2m 2s fix_1848
fix_1848
October 16, 2024 09:31 2m 2s
Add an hts_crc32 function to use zlib or libdeflate. Windows/MinGW-W64 CI #82: Commit 16426b6 pushed by jkbonfield
October 15, 2024 11:34 4m 30s hts_crc32
hts_crc32
October 15, 2024 11:34 4m 30s
Add an hts_crc32 function to use zlib or libdeflate. Windows/MinGW-W64 CI #81: Commit ae20105 pushed by jkbonfield
October 15, 2024 11:29 2m 43s hts_crc32
hts_crc32
October 15, 2024 11:29 2m 43s
Fix issue created in PR#1848 Windows/MinGW-W64 CI #80: Commit b3a4c0a pushed by jkbonfield
October 14, 2024 13:57 5m 9s fix_1848
fix_1848
October 14, 2024 13:57 5m 9s
Fix minor inconsistency in test data. Windows/MinGW-W64 CI #79: Commit 1fe6f9d pushed by jkbonfield
October 9, 2024 09:12 4m 41s cram_cons_LN
cram_cons_LN
October 9, 2024 09:12 4m 41s
Fix minor inconsistency in test data. Windows/MinGW-W64 CI #78: Commit 2a35e48 pushed by jkbonfield
October 7, 2024 13:32 4m 40s cram_cons_LN
cram_cons_LN
October 7, 2024 13:32 4m 40s
Fix CRAM embed_ref=2 with seqs overlapping ref end. Windows/MinGW-W64 CI #77: Commit a4d111a pushed by jkbonfield
October 7, 2024 13:04 4m 38s cram_cons_LN
cram_cons_LN
October 7, 2024 13:04 4m 38s
Fix CRAM embed_ref=2 with seqs overlapping ref end. Windows/MinGW-W64 CI #76: Commit 46aea92 pushed by jkbonfield
October 7, 2024 11:35 4m 35s cram_cons_LN
cram_cons_LN
October 7, 2024 11:35 4m 35s
Fix CRAM embed_ref=2 with seqs overlapping ref end. Windows/MinGW-W64 CI #75: Commit ca241c9 pushed by jkbonfield
October 7, 2024 11:13 4m 30s cram_cons_LN
cram_cons_LN
October 7, 2024 11:13 4m 30s
Fix CRAM embed_ref=2 with seqs overlapping ref end. Windows/MinGW-W64 CI #74: Commit 8c8a612 pushed by jkbonfield
October 7, 2024 10:55 3m 11s cram_cons_LN
cram_cons_LN
October 7, 2024 10:55 3m 11s
Fix CRAM embed_ref=2 with seqs overlapping ref end. Windows/MinGW-W64 CI #73: Commit ac4b981 pushed by jkbonfield
October 7, 2024 10:51 3m 19s cram_cons_LN
cram_cons_LN
October 7, 2024 10:51 3m 19s
Replace home-brew string end searching with memchr. Windows/MinGW-W64 CI #72: Commit 3b486e5 pushed by jkbonfield
September 26, 2024 10:11 4m 35s skip_aux_memchr
skip_aux_memchr
September 26, 2024 10:11 4m 35s
Replace home-brew string end searching with memchr. Windows/MinGW-W64 CI #71: Commit 3b71dbc pushed by jkbonfield
September 24, 2024 16:16 4m 56s skip_aux_memchr
skip_aux_memchr
September 24, 2024 16:16 4m 56s
Add sam_hdr_passes_filter() for SAM header filter expressions Windows/MinGW-W64 CI #70: Commit 88586e5 pushed by jkbonfield
September 17, 2024 13:45 5m 26s sam-header-expr
sam-header-expr
September 17, 2024 13:45 5m 26s
Fix on-the-fly indexing of VCF w.r.t virtual offsets. Windows/MinGW-W64 CI #69: Commit b66c6d2 pushed by jkbonfield
September 12, 2024 14:28 5m 0s VCF-tbi-indexing
VCF-tbi-indexing
September 12, 2024 14:28 5m 0s
Fix on-the-fly indexing of VCF w.r.t virtual offsets. Windows/MinGW-W64 CI #68: Commit 68dbce0 pushed by jkbonfield
September 12, 2024 14:24 5m 24s VCF-tbi-indexing
VCF-tbi-indexing
September 12, 2024 14:24 5m 24s
Document the future plan to make CRAM3.1 the default version Windows/MinGW-W64 CI #67: Commit 38a3943 pushed by jkbonfield
September 4, 2024 11:36 4m 29s NEWS-1.21
NEWS-1.21
September 4, 2024 11:36 4m 29s