Clean up getic scripts

jet xml file calls getic_gsl_fv3gfsv16.sh hera xml file calls getic.sh (includes EMCDIR)
jkhender · Aug 23, 2023 · 188bfc1 · 188bfc1
1 parent f4eb407
commit 188bfc1
Show file tree

Hide file tree

Showing 4 changed files with 10 additions and 66 deletions.
diff --git a/jobs/rocoto/getic.sh b/jobs/rocoto/getic.sh
@@ -2,7 +2,7 @@
 
 source "$HOMEgfs/ush/preamble.sh"
 
-## this script makes links to FV3GFS netcdf files under /public and copies over GFS analysis file for verification
+## this script makes links to FV3GFS netcdf files under /public 
 ##   /home/rtfim/UFS_CAMSUITE/FV3GFSrun/FV3ICS/YYYYMMDDHH/gfs
 ##     gfs.tHHz.sfcanl.nc -> /public/data/grids/gfs/netcdf/YYDDDHH00.gfs.tHHz.sfcanl.nc
 ##     gfs.tHHz.atmanl.nc -> /public/data/grids/gfs/netcdf/YYDDDHH00.gfs.tHHz.atmanl.nc
@@ -13,7 +13,6 @@ echo "CDUMP = $CDUMP"
 echo "COMPONENT = $COMPONENT"
 echo "ICSDIR = $ICSDIR"
 echo "PUBDIR = $PUBDIR"
-echo "GFSDIR = $GFSDIR"
 echo "RETRODIR = $RETRODIR"
 echo "ROTDIR = $ROTDIR"
 echo "PSLOT = $PSLOT"
@@ -23,7 +22,7 @@ echo
 yyyymmdd=`echo $CDATE | cut -c1-8`
 hh=`echo $CDATE | cut -c9-10`
 yyddd=`date +%y%j -u -d $yyyymmdd`
-fv3ic_dir=${ROTDIR}/${CDUMP}.${yyyymmdd}/${hh}/model_data/${COMPONENT}
+fv3ic_dir=${ROTDIR}/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}
 
 ## create links in FV3ICS directory
 mkdir -p $fv3ic_dir
@@ -48,6 +47,12 @@ elif [[ -f $PUBDIR/${pubatm_file} ]]; then
   echo "linking $PUBDIR...."
   ln -fs $PUBDIR/${pubsfc_file} $sfc_file
   ln -fs $PUBDIR/${pubatm_file} $atm_file
+elif  [[ -f $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file} ]]; then
+  echo "linking $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}..."
+  echo "sfc_file:  $sfc_file"
+  echo "atm_file:  $atm_file"
+  ln -s $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${sfc_file}
+  ln -s $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file}
 elif  [[ -f $RETRODIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file} ]]; then
   echo "linking $RETRODIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}..."
   echo "sfc_file:  $sfc_file"

diff --git a/jobs/rocoto/getic_gsl.sh b/jobs/rocoto/getic_gsl.sh
diff --git a/jobs/rocoto/getic_gsl_fv3gfsv15.sh b/jobs/rocoto/getic_gsl_fv3gfsv15.sh
@@ -2,7 +2,7 @@
 
 source "$HOMEgfs/ush/preamble.sh"
 
-## this script makes links to FV3GFS (GFSv15.1) nemsio files under /public and copies over GFS analysis file for verification
+## this script makes links to FV3GFS (GFSv15.1) nemsio files under /public 
 ##   /scratch4/BMC/rtfim/rtfuns/FV3GFS/FV3ICS/YYYYMMDDHH/gfs
 ##     gfs.tHHz.sfcanl.nemsio -> /public/data/grids/gfs/nemsio/YYDDDHH00.gfs.tHHz.sfcanl.nemsio
 ##     gfs.tHHz.atmanl.nemsio -> /public/data/grids/gfs/nemsio/YYDDDHH00.gfs.tHHz.atmanl.nemsio
@@ -14,7 +14,6 @@ echo "CDUMP = $CDUMP"
 echo "COMPONENT = $COMPONENT"
 echo "ICSDIR = $ICSDIR"
 echo "PUBDIR = $PUBDIR"
-echo "GFSDIR = $GFSDIR"
 echo "RETRODIR = $RETRODIR"
 echo "ROTDIR = $ROTDIR"
 echo "PSLOT = $PSLOT"

diff --git a/jobs/rocoto/getic_gsl_fv3gfsv16.sh b/jobs/rocoto/getic_gsl_fv3gfsv16.sh
@@ -2,7 +2,7 @@
 
 source "$HOMEgfs/ush/preamble.sh"
 
-## this script makes links to FV3GFS netcdf files under /public and copies over GFS analysis file for verification
+## this script makes links to FV3GFS netcdf files under /public 
 ##   /home/rtfim/UFS_CAMSUITE/FV3GFSrun/FV3ICS/YYYYMMDDHH/gfs
 ##     gfs.tHHz.sfcanl.nc -> /public/data/grids/gfs/netcdf/YYDDDHH00.gfs.tHHz.sfcanl.nc
 ##     gfs.tHHz.atmanl.nc -> /public/data/grids/gfs/netcdf/YYDDDHH00.gfs.tHHz.atmanl.nc