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Create new branch, gsl_ufs_dev, from dev_02jan24_9d901db
Add initial GSL modifications
- changes to workflow files
* GSL paths, projects, entities
- new FV3_GFS_v17_p8_ugwpv1_mynn suite definition file (SDF)
- updated namelist parameters in ush/parsing_namelists_FV3.sh
- create new GSL directories: ufs_model.fd_gsl and ufs_utils.fd_gsl
* new SDFs, add instantaneous flux variables to grib2 configuration files
* add Thompson tracers to initial conditions
- new sync script: rsync_gsl.sh
- new job files: getic.sh, makeinit_link.sh
- modify build_ufs.sh to include MYNN SDF- Loading branch information
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| checked out dev_02jan24_9d901db from Judy's fork | ||
| (same version that is running under /scratch1/BMC/gsd-fv3-dev/jhender/test/emc_gw) | ||
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| 02Jan24 global-workflow | ||
| UFS: 21Dec23, 991d652 | ||
| UPP: 07Nov23, 78f369b | ||
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| use submodules instead of checkout.sh | ||
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| gfsatmos_products replaces gfspost tasks |
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| #! /usr/bin/env bash | ||
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| source "$HOMEgfs/ush/preamble.sh" | ||
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| ## this script makes links to FV3GFS netcdf files under /public | ||
| ## /home/rtfim/UFS_CAMSUITE/FV3GFSrun/FV3ICS/YYYYMMDDHH/gfs | ||
| ## gfs.tHHz.sfcanl.nc -> /public/data/grids/gfs/netcdf/YYDDDHH00.gfs.tHHz.sfcanl.nc | ||
| ## gfs.tHHz.atmanl.nc -> /public/data/grids/gfs/netcdf/YYDDDHH00.gfs.tHHz.atmanl.nc | ||
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| echo | ||
| echo "CDATE = $CDATE" | ||
| echo "CDUMP = $CDUMP" | ||
| echo "COMPONENT = $COMPONENT" | ||
| echo "ICSDIR = $ICSDIR" | ||
| echo "PUBDIR = $PUBDIR" | ||
| echo "RETRODIR = $RETRODIR" | ||
| echo "ROTDIR = $ROTDIR" | ||
| echo "PSLOT = $PSLOT" | ||
| echo | ||
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| ## initialize | ||
| yyyymmdd=`echo $CDATE | cut -c1-8` | ||
| hh=`echo $CDATE | cut -c9-10` | ||
| yyddd=`date +%y%j -u -d $yyyymmdd` | ||
| fv3ic_dir=${ROTDIR}/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT} | ||
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| ## create links in FV3ICS directory | ||
| mkdir -p $fv3ic_dir | ||
| cd $fv3ic_dir | ||
| echo "making link to netcdf files under $fv3ic_dir" | ||
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| pubsfc_file=${yyddd}${hh}00.${CDUMP}.t${hh}z.sfcanl.nc | ||
| sfc_file=`echo $pubsfc_file | cut -d. -f2-` | ||
| pubatm_file=${yyddd}${hh}00.${CDUMP}.t${hh}z.atmanl.nc | ||
| atm_file=`echo $pubatm_file | cut -d. -f2-` | ||
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| echo "pubsfc_file: $pubsfc_file" | ||
| echo "pubatm_file: $pubatm_file" | ||
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| if [[ -f $RETRODIR/${pubatm_file} ]]; then | ||
| echo "linking $RETRODIR...." | ||
| echo "pubsfc_file: $pubsfc_file" | ||
| echo "pubatm_file: $pubatm_file" | ||
| ln -fs $RETRODIR/${pubsfc_file} $sfc_file | ||
| ln -fs $RETRODIR/${pubatm_file} $atm_file | ||
| elif [[ -f $PUBDIR/${pubatm_file} ]]; then | ||
| echo "linking $PUBDIR...." | ||
| ln -fs $PUBDIR/${pubsfc_file} $sfc_file | ||
| ln -fs $PUBDIR/${pubatm_file} $atm_file | ||
| elif [[ -f $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file} ]]; then | ||
| echo "linking $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}..." | ||
| echo "sfc_file: $sfc_file" | ||
| echo "atm_file: $atm_file" | ||
| ln -s $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${sfc_file} | ||
| ln -s $EMCDIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file} | ||
| elif [[ -f $RETRODIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file} ]]; then | ||
| echo "linking $RETRODIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}..." | ||
| echo "sfc_file: $sfc_file" | ||
| echo "atm_file: $atm_file" | ||
| ln -s $RETRODIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${sfc_file} | ||
| ln -s $RETRODIR/${CDUMP}.${yyyymmdd}/${hh}/${COMPONENT}/${atm_file} | ||
| else | ||
| echo "missing input files!" | ||
| exit 1 | ||
| fi |
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| #!/bin/sh | ||
| ## | ||
| ## this script makes a link to $ICSDIR/YYYYMMDDHH/gfs/<CASE>/INPUT | ||
| ## | ||
| ## md ${ROTDIR}/${CDUMP}.${yyyymmdd}/${hh}/model_data/${COMPONENT} | ||
| ## cd ${ROTDIR}/${CDUMP}.${yyyymmdd}/${hh}/model_data/${COMPONENT} | ||
| ## ln -s /scratch4/BMC/rtfim/rtruns/FV3ICS/YYYYMMDDHH/gfs/C768/INPUT input | ||
| ## | ||
| ## | ||
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| echo | ||
| echo "CDATE = $CDATE" | ||
| echo "CASE = $CASE" | ||
| echo "CDUMP = $CDUMP" | ||
| echo "COMPONENT = $COMPONENT" | ||
| echo "ICSDIR = $ICSDIR" | ||
| echo "ROTDIR = $ROTDIR" | ||
| echo | ||
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| ## initialize | ||
| yyyymmdd=`echo $CDATE | cut -c1-8` | ||
| hh=`echo $CDATE | cut -c9-10` | ||
| init_dir=$ICSDIR/${CDATE}/${CDUMP}/${CASE} | ||
| outdir=${ROTDIR}/${CDUMP}.${yyyymmdd}/${hh}/model_data/${COMPONENT} | ||
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| ## create link to FV3ICS directory | ||
| if [[ ! -d $outdir ]]; then | ||
| mkdir -p $outdir | ||
| status=$? | ||
| if [ $status -ne 0 ]; then | ||
| echo "can't make link to $outdir...." | ||
| return $status | ||
| fi | ||
| fi | ||
| cd $outdir | ||
| echo "making link to FV3ICS directory: $init_dir/INPUT" | ||
| ln -fs $init_dir/INPUT input | ||
| status=$? | ||
| exit $status |
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| #!/bin/sh | ||
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| ## | ||
| ## this script copies over GSL changes not in ufs-community/ufs-weather-model repository | ||
| ## | ||
| for dir in ufs_model.fd ufs_utils.fd; do | ||
| if [[ -d ${dir}_gsl ]]; then | ||
| echo "syncing ${dir}_gsl...." | ||
| rsync -avx ${dir}_gsl/ ${dir}/ | ||
| fi | ||
| done | ||
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99
sorc/ufs_model.fd_gsl/FV3/ccpp/suites/suite_FV3_GFS_v17_p8_c3_mynn.xml
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| <?xml version="1.0" encoding="UTF-8"?> | ||
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| <suite name="FV3_GFS_v17_p8_c3_mynn" version="1"> | ||
| <!-- <init></init> --> | ||
| <group name="time_vary"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_time_vary_pre</scheme> | ||
| <scheme>GFS_rrtmg_setup</scheme> | ||
| <scheme>GFS_rad_time_vary</scheme> | ||
| <scheme>GFS_phys_time_vary</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <group name="radiation"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_suite_interstitial_rad_reset</scheme> | ||
| <scheme>sgscloud_radpre</scheme> | ||
| <scheme>GFS_rrtmg_pre</scheme> | ||
| <scheme>GFS_radiation_surface</scheme> | ||
| <scheme>rad_sw_pre</scheme> | ||
| <scheme>rrtmg_sw</scheme> | ||
| <scheme>rrtmg_sw_post</scheme> | ||
| <scheme>rrtmg_lw_pre</scheme> | ||
| <scheme>rrtmg_lw</scheme> | ||
| <scheme>sgscloud_radpost</scheme> | ||
| <scheme>rrtmg_lw_post</scheme> | ||
| <scheme>GFS_rrtmg_post</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <group name="physics"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_suite_interstitial_phys_reset</scheme> | ||
| <scheme>GFS_suite_stateout_reset</scheme> | ||
| <scheme>get_prs_fv3</scheme> | ||
| <scheme>GFS_suite_interstitial_1</scheme> | ||
| <scheme>GFS_surface_generic_pre</scheme> | ||
| <scheme>GFS_surface_composites_pre</scheme> | ||
| <scheme>dcyc2t3</scheme> | ||
| <scheme>GFS_surface_composites_inter</scheme> | ||
| <scheme>GFS_suite_interstitial_2</scheme> | ||
| </subcycle> | ||
| <!-- Surface iteration loop --> | ||
| <subcycle loop="2"> | ||
| <scheme>sfc_diff</scheme> | ||
| <scheme>GFS_surface_loop_control_part1</scheme> | ||
| <scheme>sfc_nst_pre</scheme> | ||
| <scheme>sfc_nst</scheme> | ||
| <scheme>sfc_nst_post</scheme> | ||
| <scheme>noahmpdrv</scheme> | ||
| <scheme>sfc_sice</scheme> | ||
| <scheme>GFS_surface_loop_control_part2</scheme> | ||
| </subcycle> | ||
| <!-- End of surface iteration loop --> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_surface_composites_post</scheme> | ||
| <scheme>sfc_diag</scheme> | ||
| <scheme>sfc_diag_post</scheme> | ||
| <scheme>GFS_surface_generic_post</scheme> | ||
| <!--scheme>GFS_PBL_generic_pre</scheme--> | ||
| <!--scheme>satmedmfvdifq</scheme--> | ||
| <!--scheme>GFS_PBL_generic_post</scheme--> | ||
| <scheme>mynnedmf_wrapper</scheme> | ||
| <scheme>GFS_GWD_generic_pre</scheme> | ||
| <scheme>unified_ugwp</scheme> | ||
| <scheme>unified_ugwp_post</scheme> | ||
| <scheme>GFS_GWD_generic_post</scheme> | ||
| <scheme>GFS_suite_stateout_update</scheme> | ||
| <scheme>h2ophys</scheme> | ||
| <scheme>get_phi_fv3</scheme> | ||
| <scheme>GFS_suite_interstitial_3</scheme> | ||
| <scheme>GFS_DCNV_generic_pre</scheme> | ||
| <scheme>cu_c3_driver_pre</scheme> | ||
| <scheme>cu_c3_driver</scheme> | ||
| <scheme>GFS_DCNV_generic_post</scheme> | ||
| <!--scheme>GFS_SCNV_generic_pre</scheme--> | ||
| <!--scheme>samfshalcnv</scheme--> | ||
| <!--scheme>GFS_SCNV_generic_post</scheme--> | ||
| <scheme>GFS_suite_interstitial_4</scheme> | ||
| <scheme>cnvc90</scheme> | ||
| <scheme>GFS_MP_generic_pre</scheme> | ||
| <scheme>mp_thompson_pre</scheme> | ||
| </subcycle> | ||
| <subcycle loop="1"> | ||
| <scheme>mp_thompson</scheme> | ||
| </subcycle> | ||
| <subcycle loop="1"> | ||
| <scheme>mp_thompson_post</scheme> | ||
| <scheme>GFS_MP_generic_post</scheme> | ||
| <scheme>cu_c3_driver_post</scheme> | ||
| <scheme>maximum_hourly_diagnostics</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <group name="stochastics"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_stochastics</scheme> | ||
| <scheme>GFS_physics_post</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <!-- <finalize></finalize> --> | ||
| </suite> |
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sorc/ufs_model.fd_gsl/FV3/ccpp/suites/suite_FV3_GFS_v17_p8_thompson.xml
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| <?xml version="1.0" encoding="UTF-8"?> | ||
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| <suite name="FV3_GFS_v17_p8_thompson" version="1"> | ||
| <!-- <init></init> --> | ||
| <group name="time_vary"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_time_vary_pre</scheme> | ||
| <scheme>GFS_rrtmg_setup</scheme> | ||
| <scheme>GFS_rad_time_vary</scheme> | ||
| <scheme>GFS_phys_time_vary</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <group name="radiation"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_suite_interstitial_rad_reset</scheme> | ||
| <scheme>GFS_rrtmg_pre</scheme> | ||
| <scheme>GFS_radiation_surface</scheme> | ||
| <scheme>rad_sw_pre</scheme> | ||
| <scheme>rrtmg_sw</scheme> | ||
| <scheme>rrtmg_sw_post</scheme> | ||
| <scheme>rrtmg_lw_pre</scheme> | ||
| <scheme>rrtmg_lw</scheme> | ||
| <scheme>rrtmg_lw_post</scheme> | ||
| <scheme>GFS_rrtmg_post</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <group name="physics"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_suite_interstitial_phys_reset</scheme> | ||
| <scheme>GFS_suite_stateout_reset</scheme> | ||
| <scheme>get_prs_fv3</scheme> | ||
| <scheme>GFS_suite_interstitial_1</scheme> | ||
| <scheme>GFS_surface_generic_pre</scheme> | ||
| <scheme>GFS_surface_composites_pre</scheme> | ||
| <scheme>dcyc2t3</scheme> | ||
| <scheme>GFS_surface_composites_inter</scheme> | ||
| <scheme>GFS_suite_interstitial_2</scheme> | ||
| </subcycle> | ||
| <!-- Surface iteration loop --> | ||
| <subcycle loop="2"> | ||
| <scheme>sfc_diff</scheme> | ||
| <scheme>GFS_surface_loop_control_part1</scheme> | ||
| <scheme>sfc_nst_pre</scheme> | ||
| <scheme>sfc_nst</scheme> | ||
| <scheme>sfc_nst_post</scheme> | ||
| <scheme>noahmpdrv</scheme> | ||
| <scheme>sfc_sice</scheme> | ||
| <scheme>GFS_surface_loop_control_part2</scheme> | ||
| </subcycle> | ||
| <!-- End of surface iteration loop --> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_surface_composites_post</scheme> | ||
| <scheme>sfc_diag</scheme> | ||
| <scheme>sfc_diag_post</scheme> | ||
| <scheme>GFS_surface_generic_post</scheme> | ||
| <scheme>GFS_PBL_generic_pre</scheme> | ||
| <scheme>satmedmfvdifq</scheme> | ||
| <scheme>GFS_PBL_generic_post</scheme> | ||
| <scheme>GFS_GWD_generic_pre</scheme> | ||
| <scheme>unified_ugwp</scheme> | ||
| <scheme>unified_ugwp_post</scheme> | ||
| <scheme>GFS_GWD_generic_post</scheme> | ||
| <scheme>GFS_suite_stateout_update</scheme> | ||
| <scheme>h2ophys</scheme> | ||
| <scheme>get_phi_fv3</scheme> | ||
| <scheme>GFS_suite_interstitial_3</scheme> | ||
| <scheme>GFS_DCNV_generic_pre</scheme> | ||
| <scheme>samfdeepcnv</scheme> | ||
| <scheme>GFS_DCNV_generic_post</scheme> | ||
| <scheme>GFS_SCNV_generic_pre</scheme> | ||
| <scheme>samfshalcnv</scheme> | ||
| <scheme>GFS_SCNV_generic_post</scheme> | ||
| <scheme>GFS_suite_interstitial_4</scheme> | ||
| <scheme>cnvc90</scheme> | ||
| <scheme>GFS_MP_generic_pre</scheme> | ||
| <scheme>mp_thompson_pre</scheme> | ||
| </subcycle> | ||
| <subcycle loop="1"> | ||
| <scheme>mp_thompson</scheme> | ||
| </subcycle> | ||
| <subcycle loop="1"> | ||
| <scheme>mp_thompson_post</scheme> | ||
| <scheme>GFS_MP_generic_post</scheme> | ||
| <scheme>maximum_hourly_diagnostics</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <group name="stochastics"> | ||
| <subcycle loop="1"> | ||
| <scheme>GFS_stochastics</scheme> | ||
| <scheme>GFS_physics_post</scheme> | ||
| </subcycle> | ||
| </group> | ||
| <!-- <finalize></finalize> --> | ||
| </suite> |
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