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-- merged 04Jan21 develop branch into emc_lgan (Lin Gan's feature/ccp…
…p branch) Squashed commit of the following: commit ef8b641 Merge: fca3433 cffc568 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request NOAA-EMC#231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc568 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433 Merge: a95cce5 abb168b Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request NOAA-EMC#221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue NOAA-EMC#220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d96 Merge: a95cce5 e89045b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5 Merge: 1562bb9 2646921 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request NOAA-EMC#216 from NOAA-EMC/issue189 Issue NOAA-EMC#189 - update ufs-weather-model hash commit 2646921 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue NOAA-EMC#189 - update ufs-weather-model hash commit 1562bb9 Merge: f3d11b9 7a9bc00 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request NOAA-EMC#213 from NOAA-EMC/hotfixes Hotfixes - issues NOAA-EMC#201, 202, 208 commit 7a9bc00 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue NOAA-EMC#201 - workaround for failing post000 job before hpc-stack solution commit 425588f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bd Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue NOAA-EMC#202 (FINDDATE) and issue NOAA-EMC#208 (postsnd.sh permissions) commit 7c7482d Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab Merge: 6da1a24 be5f9ec Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request NOAA-EMC#205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ec Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24 Merge: ce1ae97 069f266 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request NOAA-EMC#204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f266 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue NOAA-EMC#197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e600377 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf33 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_calc.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_diag.ecf modified: 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parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae97 Merge: b096e29 e9d00e4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request NOAA-EMC#192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e4 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9 Merge: e3972f1 32a004a Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request NOAA-EMC#186 from lgannoaa/feature/ccpp Initial support for CCPP. commit b096e29 Merge: 9fa9ffe 670b97c Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request NOAA-EMC#173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 670b97c Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr
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