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Merge pull request #18 from nsoranzo/tighten_phylip_datatype
Sniff relaxed and strict interleaved PHYLIP files
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,30 @@ | ||
9 144 | ||
OM-RGC.v1.012162940 ---------- ---------- RVFERFGLAP MDKPFDPITT FDYD-SRQVF IQ-----TDA | ||
FELIC KMKIL-I--- -CYGFIIRRL IVNERFGRTS MDKPNDTIES FSME-KEDVF PQLFPKVLDA | ||
OM-RGC.v1.010553481 MKKIFLL--- -NDGITIREI SIIEVFAKRK LNKPFDTIEP FSE--TQKVR PAVRKNGNSS | ||
OM-RGC.v1.001504500 YLKLFLLNHP TFSGIQYPF- NDRRTSQTRQ FNSPFDKYAD STFEMTDRFW TFTRKTLEEF | ||
OM-RGC.v1.012274392 ---------- ----IQYPF- NNRRTSQTRQ FNSPFDKYAD STFEMTDRFW TFTKKTLDEF | ||
OM-RGC.v1.003588026 ------D-QF SWTLIQNESG DSEQEGFVYD FNSPFDKIYD DFYRLENRLF SRSMRDLDYF | ||
OM-RGC.v1.002677074 -----YD-QF SWTDIEYEFG DSSQEGFISD FNSPFDKIYD EFYKLDSRLF SRTMRDLNYF | ||
OM-RGC.v1.012568023 ---------- ---------- ----KGFTSK YNAPFDNIID LSRSLDWFME NWTQWLLEDY | ||
OM-RGC.v1.002130110 --LLR-N--- ----VND--- --LQNVFLKK SDKPFDTAEF QDSDLSLNLY ---QPELTIH | ||
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SFRAEW---- -NQISGTTK- -DTYPVVSLI AIASFLESSV SDQASFTVLT IVAFNLVADK | ||
S-YEEWDKKD YNHLSANKK- -ESFSRAIWF GVVSFV--DF ANQNSFTLMT MVTFNFTSSL | ||
VDI--WKFKV E--------- -DR------- ----ILAPGS KN-------S LMT------- | ||
MDDSGWKY-- ERDTVDVPGQ YDA---LHFI ILSCVVDPEL EARTTIVCLS LIAYNVIDAE | ||
MDDSGWKY-- ERDTVDVPGQ YDA---LHFI ILSCVVDPEL EARTTIVCLS LIAYNVIDAE | ||
VKKVGWNA-- EQDPNRATA- -SA---IHFI ILMCVVDPEL ESRTTIVCLS LIAYNVIDSE | ||
LKKNGWDA-- KQDPNRSSE- -SA---IHFI ILMCVVDPEL ESRTTIVCLS LIAYNVIDSE | ||
AGEIEWDA-- YKDPVYLSQ- -IG---IFFI ILLCFIHPEL ESKTTIICLS LIAYNVIDED | ||
KEIYEWD--- HTEIYGQGS- -QT---IFLI IVWSFIRAEL ESKASMGSLT LVAYNVFGDD | ||
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||
PAFALMFLSV ASSSI-DTRF PLAF | ||
TPFIISSL-L TYSV--NFQF PLLI | ||
---------- ---------- ---- | ||
KEVWVIYVPF FRK-L-EIKG LSSN | ||
KEVWVIYVPF FRK-L-EIKG LSS- | ||
KEVWVIYVPF FRK-I-EIKG LSSN | ||
KE-------- ---------- ---- | ||
KSIYILFVPF YQM-V-DKRG PILN | ||
KNIAILFLSV YFLTINDKRV PGLL |
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