MetaboShiny Doesn't Exist!

[rballachay]

Hi, I have followed all the steps in the file inst/install.metshi.R for installation through RStudio. I think this package may not be supported by my newer version of R (4.0.5). Suggestions? Thx.

[joannawolthuis]

Hi there! Thanks for your interest and apologies for the inconvenience. Would you mind trying the install.metshi in the 'dev' github branch? I need to update the master branch asap, but the dev branch is currently more up to date. :)

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On Thu, May 13, 2021, 9:09 PM rballachay ***@***.***> wrote: Hi, I have followed all the steps in the file inst/install.metshi.R for installation through RStudio. I think this package may not be supported by my newer version of R (4.0.5). Suggestions? Thx. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#52>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEAG4ZOMNMQY3W7G3XASDCTTNQPWTANCNFSM443CVGGA> .

[rballachay]

It almost worked, the shiny app launched but it looks like there was a compilation error with the following output:

ERROR: compilation failed for package ‘MetaboAnalystR’

• removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/MetaboAnalystR’
  Warning in loadSupport(appDir, renv = sharedEnv, globalrenv = globalenv()) :
  Loading R/ subdirectory for Shiny application, but this directory appears to contain an R package. Sourcing files in R/ may cause unexpected behavior.

Thx for the help.

[joannawolthuis]

Hi there, happy that helped! Was there any more output? :O perhaps specific libraries required by the MetaboAnalystR package? The docker version is also an option perhaps, it may save some time setting up.

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On Thu, May 13, 2021, 9:46 PM rballachay ***@***.***> wrote: It almost worked, the shiny app launched but it looks like there was a compilation error with the following output: ERROR: compilation failed for package ‘MetaboAnalystR’ - removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/MetaboAnalystR’ Warning in loadSupport(appDir, renv = sharedEnv, globalrenv = globalenv()) : Loading R/ subdirectory for Shiny application, but this directory appears to contain an R package. Sourcing files in R/ may cause unexpected behavior. Thx for the help. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#52 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEAG4ZPQMVYHCRZBN5PS643TNQUDFANCNFSM443CVGGA> .