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OSError: [Errno 18] Invalid cross-device link #21

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yujun2017 opened this issue Nov 28, 2022 · 1 comment
Open

OSError: [Errno 18] Invalid cross-device link #21

yujun2017 opened this issue Nov 28, 2022 · 1 comment

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@yujun2017
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When we run ntm-profiler in tomcat environment, we got "OSError: [Errno 18] Invalid cross-device link" error in fastq.py file. This error caused by os.rename function. os.rename only works if source and destination are on the same file system.
Could you please fix the issue using shutil.move?
We didn't check another files.
jodyphelan added a commit to jodyphelan/pathogen-profiler that referenced this issue Jan 9, 2023
@jodyphelan
Fix for jodyphelan/NTM-Profiler/issues/21
d366ff9
@jodyphelan
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This will be fixed in the upcoming version.

@jodyphelan jodyphelan mentioned this issue Jan 9, 2023
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@jodyphelan @yujun2017