Added metadata option to the postprocessing module file

joechanlab · Jul 15, 2024 · 51f127a · 51f127a
1 parent d104cbf
commit 51f127a
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/modules/postprocessing/main.nf b/modules/postprocessing/main.nf
@@ -16,10 +16,12 @@ process POSTPROCESSING {
     python ${baseDir}/bin/postprocessing.py \
         ${scvi_h5ad} \
         ${params.experiment.name ? params.experiment.name + '_' : ''}postprocessing.h5ad \
-        --n_pca_components ${params.postprocessing.n_pca_components}
+        --n_pca_components ${params.postprocessing.n_pca_components} \
+        --metadata ${params.postprocessing.metadata}
     python ${baseDir}/bin/postprocessing.py \
         ${scvi_h5ad} \
         ${params.experiment.name ? params.experiment.name + '_' : ''}postprocessing_scvi.h5ad \
-        --use_scvi
+        --use_scvi \
+        --metadata ${params.postprocessing.metadata}
     """
 }