GitHub - joelkandiah/Practical_Filtering_SEIR: A sample epidemic model using turing.jl and julia to test the Practical Filtering Sliding Window Method

joelkandiah / Practical_Filtering_SEIR Public

Notifications You must be signed in to change notification settings
Fork 0
Star 0

A sample epidemic model using turing.jl and julia to test the Practical Filtering Sliding Window Method

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 37 Commits
ContactMats		ContactMats
Serosamples_N		Serosamples_N
posterior_inputs		posterior_inputs
.gitignore		.gitignore
AlternativeConditioning.jl		AlternativeConditioning.jl
AlternativeConditioning2.jl		AlternativeConditioning2.jl
AlternativeConditioning3.jl		AlternativeConditioning3.jl
Distances Sero.jl		Distances Sero.jl
Main.jl		Main.jl
Manifest.toml		Manifest.toml
Project.toml		Project.toml
SEIR Mass Action Contact Mats no sero.jl		SEIR Mass Action Contact Mats no sero.jl
SEIR Mass Action Contact Mats sero GP.jl		SEIR Mass Action Contact Mats sero GP.jl
SEIR Mass Action Contact Mats sero no window.jl		SEIR Mass Action Contact Mats sero no window.jl
SEIR Mass Action Contact Mats sero with regions no window improved.jl		SEIR Mass Action Contact Mats sero with regions no window improved.jl
SEIR Mass Action Contact Mats sero with regions no window.jl		SEIR Mass Action Contact Mats sero with regions no window.jl
SEIR Mass Action Contact Mats sero with regions reed frost SSM.jl		SEIR Mass Action Contact Mats sero with regions reed frost SSM.jl
SEIR Mass Action Contact Mats sero with regions reed frost full spec v2.jl		SEIR Mass Action Contact Mats sero with regions reed frost full spec v2.jl
SEIR Mass Action Contact Mats sero with regions reed frost full spec v3.jl		SEIR Mass Action Contact Mats sero with regions reed frost full spec v3.jl
SEIR Mass Action Contact Mats sero with regions reed frost full spec v4.jl		SEIR Mass Action Contact Mats sero with regions reed frost full spec v4.jl
SEIR Mass Action Contact Mats sero with regions reed frost full spec v5.jl		SEIR Mass Action Contact Mats sero with regions reed frost full spec v5.jl
SEIR Mass Action Contact Mats sero with regions reed frost full spec v7.jl		SEIR Mass Action Contact Mats sero with regions reed frost full spec v7.jl
SEIR Mass Action Contact Mats sero with regions reed frost full spec.jl		SEIR Mass Action Contact Mats sero with regions reed frost full spec.jl
SEIR Mass Action Contact Mats sero with regions reed frost.jl		SEIR Mass Action Contact Mats sero with regions reed frost.jl
SEIR Mass Action Contact Mats sero with regions.jl		SEIR Mass Action Contact Mats sero with regions.jl
SEIR Mass Action Contact Mats sero.jl		SEIR Mass Action Contact Mats sero.jl
SEIR model 1D no PF.jl		SEIR model 1D no PF.jl
SEIR model 1D no serology.jl		SEIR model 1D no serology.jl
SEIR_bayescomp_one_region.jl		SEIR_bayescomp_one_region.jl
SEIR_bayescomp_one_region_SW.jl		SEIR_bayescomp_one_region_SW.jl
SEIR_bayescomp_one_region_dists.jl		SEIR_bayescomp_one_region_dists.jl
SEIR_bayescomp_one_region_no_SW.jl		SEIR_bayescomp_one_region_no_SW.jl
SEIR_system_wth_CM2_older_infec_1.png		SEIR_system_wth_CM2_older_infec_1.png
Test distances.jl		Test distances.jl
TestOriginalInferenceSpeed.jl		TestOriginalInferenceSpeed.jl
config.toml		config.toml
my_model.toml		my_model.toml
old.toml		old.toml
posterior_values.jl		posterior_values.jl
run.sh		run.sh
submit.slurm		submit.slurm
submit_2.slurm		submit_2.slurm
test.png		test.png
test1.png		test1.png
test2.png		test2.png
test3.png		test3.png
test4.png		test4.png
test_meeting.png		test_meeting.png