README

A docker image for running SQANTI3

Usage

There are two main Python scripts in SQANTI3: sqanti3_qc.py and sqanti3_RulesFilter.py. They can be run in the image as follows:

sqanti3_qc.py

# Using the most recent version
docker run --rm joelnitta/sqanti3:latest sqanti3_qc.py --help
# Using a specific version of SQANTI3
docker run --rm joelnitta/sqanti3:4.2 sqanti3_qc.py --help

sqanti3_RulesFilter.py

# Using the most recent version
docker run --rm joelnitta/sqanti3:latest sqanti3_RulesFilter.py --help
# Using a specific version of SQANTI3
docker run --rm joelnitta/sqanti3:4.2 sqanti3_RulesFilter.py --help