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Error: unable to find an inherited method for function ‘normalize’ for signature ‘object = "phyloseq"’ #1768

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Saeedjaanz opened this issue Aug 23, 2024 · 0 comments

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@Saeedjaanz
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Transform OTU table

ps.sp.trans <- transform_sample_counts(ps.sp, function(x) log10(x))

Im trying to normalize a transformed phyloseq (which I did sucesssfully) object; ps.sp is a Large Phyloseq object in the above line of code.
And for normalization, Im using:

Normalize OTU table

ps.sp.norm <- normalize(ps.sp.trans, method = "CSS")

ERROR:

normalize(ps.sp.trans, method = "CSS")
Error: unable to find an inherited method for function ‘normalize’ for signature ‘object = "phyloseq"’

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