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Issues list

import_biom issue
#1775 opened Nov 1, 2024 by skose82
Phyloseq package citation
#1774 opened Oct 24, 2024 by UniAlberta
2
Error in access(object, "otu_table", errorIfNULL) :
#1773 opened Oct 9, 2024 by kdbchau
Where to find CAP1 and CAP2 values in phyloseq::ordinate with method "CAP"
#1772 opened Sep 25, 2024 by msconstante
1
merge_phyloseq deleting samples
#1771 opened Sep 18, 2024 by efgellerson
1
Strange issue when importing data
#1770 opened Sep 16, 2024 by msuokas-bco
Error: unable to find an inherited method for function ‘normalize’ for signature ‘object = "phyloseq"’
#1768 opened Aug 23, 2024 by Saeedjaanz
sorry, delete this issue I had made an error
#1766 opened Jul 30, 2024 by arthurltaylor
How to add scale bar in tree
#1765 opened Jul 12, 2024 by Dee-91
Clashing transpose method with Matrix
#1764 opened Jul 8, 2024 by BertvanderVeen
Merging sequencing runs containing different studies using merge_phyloseq?
#1763 opened Jun 29, 2024 by punnettsun
Taxa names coming up as random words
#1762 opened Jun 26, 2024 by backwards-charm
7
technical question using ordinate phyloseq function with envfit of vegan Package
#1761 opened Jun 26, 2024 by cabraham03
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘tax_table’ for signature ‘"list"or"matrix"
#1760 opened Jun 26, 2024 by npj06
webR support
#1759 opened Jun 21, 2024 by isbool
plot_tree and taxonomy
#1758 opened Jun 15, 2024 by antoine4ucsd
Subtracting taxa from a phyloseq object
#1755 opened May 30, 2024 by GinaGizzi
Taxa abundance with plot_bar - Can the color squares in the key be reduced in size?
#1754 opened May 30, 2024 by atozga
rarefy_even_depth() Error en rep_len(x["OTUi"], x["times"]): valor de 'length.out' no válido
#1753 opened May 27, 2024 by imonteroo
Error : invalid class “phyloseq” object: Component taxa/OTU names do not match.
#1752 opened May 24, 2024 by Saesha5
Plot_Networt by Phyloseq Object
#1751 opened May 21, 2024 by Motteran
Remove mitochondrial and chloroplastic taxons from my phyloseq object
#1750 opened May 14, 2024 by pailloufat-stack
Error when using hellinger transformation with ordinate and PCoA
#1749 opened May 7, 2024 by timz0605
1
Extremely wide variation of alpha diversity estimates among different studies
#1747 opened Apr 24, 2024 by migfejo
Missing reads creating phyloseq object after dada2 pipeline
#1746 opened Apr 22, 2024 by GingerMATE
1
ProTip! Updated in the last three days: updated:>2024-11-18.