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[![Binstar Badge](https://binstar.org/anaconda/conda/badges/installer/conda.svg)](https://conda.binstar.org/anaconda)
[![](http://meritbadge.herokuapp.com/bio)](https://crates.io/crates/bio)

# ALPACA - the ALgebraic PArallel variant CAller
ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data.
It has two major distinguishing features compared to other variant callers:
Expand All @@ -23,6 +26,16 @@ A complete description of algebraic variant calling can be found in my thesis
If you use ALPACA, please cite the thesis for now.

## Installation

The easiest way to install ALPACA is to use the conda package manager (http://conda.pydata.org/docs/install/quick.html). With conda installed, you can issue

$ conda install -c johanneskoester alpaca

to install ALPACA. It can be updated via

$ conda update -c johanneskoester alpaca

## Example usage

All in one command:
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