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155 followers · 10 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

Highlights

  • Pro

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@mrc-ide @bacpop

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  1. bacpop/PopPUNK bacpop/PopPUNK Public

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 93 20

  2. bacpop/pp-sketchlib bacpop/pp-sketchlib Public

    Library of sketching functions used by PopPUNK

    C++ 30 8

  3. bacpop/mandrake bacpop/mandrake Public

    Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

    Python 36 2

  4. bacpop/ska.rust bacpop/ska.rust Public

    Split k-mer analysis – version 2

    Rust 71 4

  5. mgalardini/pyseer mgalardini/pyseer Public

    SEER, reimplemented in python 🐍🔮

    Python 111 27

  6. bacpop/unitig-caller bacpop/unitig-caller Public

    Methods to determine sequence element (unitig) presence/absence

    Python 18 3