Adding comments and document_num to sanctaury model and schema (#137)

Problem
Sanctuary would like these two attributes added

Solution
- added document_num and comment to sanctuary model and schema
- added migration file

Ticket URL
https://mediform.atlassian.net/browse/MEDI-90

Documentation
NA

Tests Run
- make testapi
- tested running migrations in dev environment

app/api/alembic/sanctuary/versions/2024-03-22_5a6e3d13358f_document_num_and_comment.py

@@ -0,0 +1,55 @@
+"""CHANGEME
+
+Revision ID: 5a6e3d13358f
+Revises: 38ecd95d6104
+Create Date: 2024-03-22 18:05:23.388169
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+from alembic import context
+
+# revision identifiers, used by Alembic.
+revision = '5a6e3d13358f'
+down_revision = '38ecd95d6104'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    schema_upgrades()
+    if context.get_x_argument(as_dictionary=True).get("data", None):
+        data_upgrades()
+
+
+def downgrade():
+    if context.get_x_argument(as_dictionary=True).get("data", None):
+        data_downgrades()
+    schema_downgrades()
+
+
+def schema_upgrades():
+    """schema upgrade migrations go here."""
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('intakes', sa.Column('document_num', sa.String(), nullable=True))
+    op.add_column('intakes', sa.Column('comment', sa.String(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def schema_downgrades():
+    """schema downgrade migrations go here."""
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('intakes', 'comment')
+    op.drop_column('intakes', 'document_num')
+    # ### end Alembic commands ###
+
+
+def data_upgrades():
+    """Add any optional data upgrade migrations here!"""
+    pass
+
+
+def data_downgrades():
+    """Add any optional data downgrade migrations here!"""
+    pass

app/api/models/intake.py

@@ -32,6 +32,8 @@ class Intake(BaseSanctuary, BasicMetrics):
     discharge_date = Column(DateTime, nullable=True)
     discharge_time = Column(DateTime, nullable=True)
     discharge_method = Column(String, nullable=True)
+    document_num = Column(String, nullable=True)
+    comment = Column(String, nullable=True)
 
 def get_intake_by_uuid(
     db: Session, uuid: uuid.UUID

app/api/schemas/intake.py

@@ -9,6 +9,7 @@ class IntakeSchema(BaseModel):
     An intake for a given patient.
     """
 
+    document_num: Optional[str]
     guest_rfid: Optional[str]
     arrival_date: datetime
     arrival_time: datetime
@@ -23,6 +24,7 @@ class IntakeSchema(BaseModel):
     discharge_date: datetime
     discharge_time: datetime
     discharge_method: Optional[str]
+    comment: Optional[str]
 
     class Config:
         orm_mode = True