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Merge issue33 branch. Fixes #33.
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jonathancrabtree committed Sep 6, 2017
2 parents 287cef6 + f7f2ade commit 87a66ff
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Showing 32 changed files with 76 additions and 75 deletions.
3 changes: 2 additions & 1 deletion ChangeLog
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

1.0.1 (?? 2016)
1.0.1 (Sep 06 2017)
-Add feat-type-regex to 'load-gene-expression-table'. Allows reading expression data
associated with RNA features rather than CDS features (the default.)
-Add 'circle' track type and regression test.
Expand All @@ -8,6 +8,7 @@
-Modify LinearScale.pm to allow negative coordinates.
-Modify circleator.t to round circle (cx, cy) coordinates when comparing SVG.
-Undo bam_get_coverage.c regression from previous commit.
-Fix SVG bug causing artifacts when rendering to PNG in some versions of Batik [Issue #33].

1.0.0 (Jan 13 2016)
-Add parser for clc_find_variations SNP/indel-finding tool.
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2 changes: 1 addition & 1 deletion bin/circleator
Original file line number Diff line number Diff line change
Expand Up @@ -3303,7 +3303,7 @@ sub draw_curved_rect {
my $mask_id = &new_svg_id();
# in the mask white is used to allow pixels through, black is used to mask them out
my $mask = $svg->mask('id' => $mask_id, 'maskUnits' => 'userSpaceOnUse', 'x' => 0, 'y' => 0, 'width' => $SVG_WIDTH, 'height' => $SVG_HEIGHT);
$mask->rect( 'x' => 0, 'y' => 0, 'width' => $SVG_WIDTH, 'height' => $SVG_HEIGHT, 'r' => $ir, 'fill' => 'white');
$mask->rect( 'x' => 0, 'y' => 0, 'width' => $SVG_WIDTH, 'height' => $SVG_HEIGHT, 'fill' => 'white');
$mask->circle( 'cx' => $XOFFSET, 'cy' => $YOFFSET, 'r' => $ir, 'fill' => 'black', %$circlePathAtts);
# outer circle with masked fill
$pathAtts->{'mask'} = 'url(#' . $mask_id . ')';
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2 changes: 1 addition & 1 deletion t/results/AE003852-AE003853-AE003852-AE003853-gff-1.svg
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2 changes: 1 addition & 1 deletion t/results/CM000961-180bp-CM000961-180bp-off-by-one-1.svg
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2 changes: 1 addition & 1 deletion t/results/CM000961-180bp-CM000961-180bp-off-by-one-2.svg
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2 changes: 1 addition & 1 deletion t/results/CM000961-180bp-labels-1.svg
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6 changes: 3 additions & 3 deletions t/results/CM000961-180bp-predef-tracks-1.svg
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6 changes: 3 additions & 3 deletions t/results/CM000961-180bp-predef-tracks-2.svg
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12 changes: 6 additions & 6 deletions t/results/CM000961-180bp-predef-tracks-3.svg
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12 changes: 6 additions & 6 deletions t/results/CM000961-180bp-tracks-1.svg
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10 changes: 5 additions & 5 deletions t/results/CM000961-CM000961-scaling-1.svg
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2 changes: 1 addition & 1 deletion t/results/CM000961-heat-maps-1.svg
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