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Improve mark name, duplicat test cmds into Make
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asoplata committed Nov 8, 2024
1 parent 7afbe60 commit 7c800e7
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Showing 6 changed files with 11 additions and 10 deletions.
8 changes: 4 additions & 4 deletions .github/workflows/unix_unit_tests.yml
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Expand Up @@ -58,14 +58,14 @@
shell: bash -el {0}
run: |
flake8 --count hnn_core
- name: Test embarrassingly parallel tests with pytest
- name: Test non-MPI, embarrassingly parallel tests with pytest
shell: bash -el {0}
run: |
python -m pytest ./hnn_core/tests/ -m "not already_parallel" -n auto --cov=hnn_core --cov-report=xml
- name: Test true parallel tests with pytest
python -m pytest ./hnn_core/tests/ -m "not uses_mpi -n auto --cov=hnn_core --cov-report=xml
- name: Test MPI-using parallel tests with pytest
shell: bash -el {0}
run: |
python -m pytest ./hnn_core/tests/ -m "already_parallel" --cov=hnn_core --cov-report=xml --cov-append
python -m pytest ./hnn_core/tests/ -m "uses_mpi --cov=hnn_core --cov-report=xml --cov-append
- name: Upload coverage to Codecov
shell: bash -el {0}
run: |
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3 changes: 2 additions & 1 deletion Makefile
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Expand Up @@ -17,7 +17,8 @@ check-manifest:
check-manifest

test: flake
pytest .
pytest ./hnn_core/tests/ -m "not uses_mpi" -n auto
pytest ./hnn_core/tests/ -m "uses_mpi"

flake:
@if command -v flake8 > /dev/null; then \
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2 changes: 1 addition & 1 deletion hnn_core/tests/test_dipole.py
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Expand Up @@ -213,7 +213,7 @@ def test_dipole_simulation():

@requires_mpi4py
@requires_psutil
@pytest.mark.already_parallel
@pytest.mark.uses_mpi
def test_cell_response_backends(run_hnn_core_fixture):
"""Test cell_response outputs across backends."""

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2 changes: 1 addition & 1 deletion hnn_core/tests/test_extracellular.py
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Expand Up @@ -170,7 +170,7 @@ def test_transfer_resistance():

@requires_mpi4py
@requires_psutil
@pytest.mark.already_parallel
@pytest.mark.uses_mpi
def test_extracellular_backends(run_hnn_core_fixture):
"""Test extracellular outputs across backends."""
# calculation of CSD requires >=4 electrode contacts
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2 changes: 1 addition & 1 deletion hnn_core/tests/test_gui.py
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Expand Up @@ -366,7 +366,7 @@ def test_gui_init_network(setup_gui):

@requires_mpi4py
@requires_psutil
@pytest.mark.already_parallel
@pytest.mark.uses_mpi
def test_gui_run_simulation_mpi():
"""Test if run button triggers simulation with MPIBackend."""
gui = HNNGUI()
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4 changes: 2 additions & 2 deletions hnn_core/tests/test_parallel_backends.py
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Expand Up @@ -77,7 +77,7 @@ def test_gid_assignment():


@pytest.mark.incremental
@pytest.mark.already_parallel
@pytest.mark.uses_mpi
class TestParallelBackends():
dpls_reduced_mpi = None
dpls_reduced_default = None
Expand Down Expand Up @@ -242,7 +242,7 @@ def test_compare_hnn_core(self, run_hnn_core_fixture, backend, n_jobs=1):
# class marked incremental
@requires_mpi4py
@requires_psutil
@pytest.mark.already_parallel
@pytest.mark.uses_mpi
def test_mpi_failure(run_hnn_core_fixture):
"""Test that an MPI failure is handled and messages are printed"""
# this MPI parameter will cause a MPI job to fail
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