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Update install.md
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refers #28
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jotech authored Sep 30, 2020
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Expand Up @@ -21,7 +21,7 @@ git clone https://github.com/jotech/gapseq && cd gapseq
## MacOS
using [homebrew](https://brew.sh)
```
brew install coreutils binutils git glpk blast bedtools r brewsci/bio/barrnap
brew install coreutils binutils git glpk blast bedtools r brewsci/bio/barrnap grep
R -e 'install.packages(c("data.table", "stringr", "sybil", "getopt", "reshape2", "doParallel", "foreach", "R.utils", "stringi", "glpkAPI"))'
R -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager"); BiocManager::install("Biostrings")'
git clone https://github.com/jotech/gapseq && cd gapseq
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