Fix wellington_bootstrap.py error, push to v0.2.2

jpiper · Nov 25, 2015 · 00167d7 · 00167d7 · fomightez · Nov 30, 2015
1 parent b3def9f
commit 00167d7
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diff --git a/CHANGES b/CHANGES
@@ -1,3 +1,7 @@
+0.2.2 - 2015-12-26
+==================
+* BUG: Fix error in ``wellington_bootstrap.py``
+
 0.2.1 - 2015-12-25
 ==================
 * ENHANCEMENT: ATAC-seq mode for ``wellington_bootstrap.py``

diff --git a/pyDNase/_version.py b/pyDNase/_version.py
@@ -1 +1 @@
-__version__ = "0.2.1"
+__version__ = "0.2.2"
diff --git a/pyDNase/scripts/wellington_bootstrap.py b/pyDNase/scripts/wellington_bootstrap.py
@@ -176,9 +176,9 @@ def __call__(self):
 assert args.FDR_limit < 0, "FDR limit must be less than 0"
 
 # Treatment
-reads2 = pyDNase.BAMHandler(args.treatment_bam, caching=0, ATAC=clargs.A)
+reads2 = pyDNase.BAMHandler(args.treatment_bam, caching=0, ATAC=args.A)
 # Control
-reads1 = pyDNase.BAMHandler(args.control_bam, caching=0, ATAC=clargs.A)
+reads1 = pyDNase.BAMHandler(args.control_bam, caching=0, ATAC=args.A)
 # Regions of Interest
 regions = pyDNase.GenomicIntervalSet(args.bedsites)
 # Output