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Improve calculate go enrichment #441

Improve calculate go enrichment

Improve calculate go enrichment #441

Re-run triggered May 22, 2024 17:42
Status Failure
Total duration 58m 44s
Artifacts 16

R-CMD-check.yaml

on: pull_request
Matrix: R-CMD-check
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27 errors and 17 warnings
macos-latest (release)
--- re-building ‘data_analysis_dose_response_workflow.Rmd’ using rmarkdown
macos-latest (release)
processing vignette 'data_analysis_single_dose_treatment_workflow.Rmd' failed with diagnostics:
macos-latest (release)
Vignette re-building failed.
macos-latest (release)
Build process failed
macos-latest (release)
Process completed with exit code 1.
macos-latest (release)
No such keg: /opt/homebrew/Cellar/r
ubuntu-latest (release)
--- re-building ‘data_analysis_dose_response_workflow.Rmd’ using rmarkdown
ubuntu-latest (release)
processing vignette 'data_analysis_single_dose_treatment_workflow.Rmd' failed with diagnostics:
ubuntu-latest (release)
Vignette re-building failed.
ubuntu-latest (release)
Build process failed
ubuntu-latest (release)
Process completed with exit code 1.
ubuntu-latest (devel)
--- re-building ‘data_analysis_dose_response_workflow.Rmd’ using rmarkdown
ubuntu-latest (devel)
processing vignette 'protein_structure_workflow.Rmd' failed with diagnostics:
ubuntu-latest (devel)
Vignette re-building failed.
ubuntu-latest (devel)
Build process failed
ubuntu-latest (devel)
Process completed with exit code 1.
windows-latest (release)
--- re-building 'data_analysis_dose_response_workflow.Rmd' using rmarkdown
windows-latest (release)
processing vignette 'protein_structure_workflow.Rmd' failed with diagnostics:
windows-latest (release)
Vignette re-building failed.
windows-latest (release)
Build process failed
windows-latest (release)
Process completed with exit code 1.
ubuntu-latest (oldrel-1)
processing vignette 'data_analysis_dose_response_workflow.Rmd' failed with diagnostics:
ubuntu-latest (oldrel-1)
Vignette re-building failed.
ubuntu-latest (oldrel-1)
R CMD check found ERRORs
ubuntu-latest (oldrel-1)
Test failures
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
ubuntu-latest (oldrel-1)
Test failures
macos-latest (release)
ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
macos-latest (release)
No files were found with the provided path: /Users/runner/work/protti/protti/check. No artifacts will be uploaded.
macos-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macos-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macos-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
ubuntu-latest (release)
ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
ubuntu-latest (release)
No files were found with the provided path: /home/runner/work/protti/protti/check. No artifacts will be uploaded.
ubuntu-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-latest (devel)
ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
ubuntu-latest (devel)
No files were found with the provided path: /home/runner/work/protti/protti/check. No artifacts will be uploaded.
ubuntu-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (release)
ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
windows-latest (release)
No files were found with the provided path: D:/a/protti/protti/check. No artifacts will be uploaded.
windows-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-latest (oldrel-1)
ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps
ubuntu-latest (oldrel-1)
ggrepel: 17 unlabeled data points (too many overlaps). Consider increasing max.overlaps
ubuntu-latest (oldrel-1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
Linux-X64-roldrel-1-4-results Expired
31.7 MB