Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fetch uniprot 252 #253

Closed
wants to merge 3 commits into from
Closed

Fetch uniprot 252 #253

wants to merge 3 commits into from

Conversation

elena-krismer
Copy link
Collaborator

closes #252 (hopefully)

Screenshot 2024-05-23 at 18 11 15

i added more verbos error messages and implemented a retry_delay (can be helpful in case UniProt API has rate limits, reduced server load)

plus, its now possible to pass the timeout/max_tries parameters from the fetch_uniprot function to try_query

i test on fetch_uniprot_proteome(9606) and it was usually working after the second attempt - but would be great if you test it as well

@elena-krismer
Copy link
Collaborator Author

i set the the default of silent in try_query to TRUE, not sure if we should keep it like this

@elena-krismer
Copy link
Collaborator Author

just saw that the test failed - will let you know when i fixed it

@jpquast
Copy link
Owner

jpquast commented Jun 14, 2024

This has been fixed in #250.

@jpquast jpquast closed this Jun 14, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants