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# Updated: 2024-08-07
1. **Casey, J.R.**, Lomas, M.W., Mandecki, J., Walker, D.E., 2007. *Prochlorococcus* contributes to new production in the Sargasso Sea deep chlorophyll maximum. *Geophysical Research Letters* 34, L10604. [PDF](/assets/docs/Casey_2007_GRL.pdf){:target="_blank"}
2. **Casey, J.R.**, Lomas, M.W., Michelou, V.K., Dyhrman, S.T., Ammerman, J.W., Sylvan, J.B., 2009. Taxon-specific orthophosphate and ATP utilization in the western Sargasso Sea. *Aquatic Microbial Ecology* 58, 31-44. [PDF](/assets/docs/Casey_2009_AME.pdf){:target="_blank"}
3. Fawcett, S.E., Lomas, M.W., **Casey, J.R.**, Ward, B.B., Sigman, D.M., 2011. Assimilation of upwelled nitrate by small eukaryotes in the Sargasso Sea. *Nature Geoscience* 4, 1–6. [PDF](/assets/docs/Fawcett_2011_NatGeosci.pdf){:target="_blank"}
4. Lomas, M.W., Moran, S.B., **Casey, J.R.**, Bell, D.W., Tiahlo, M., Whitefield, J., Kelly, R.P., Mathis, J.T., Cokelet, E.D., 2012. Spatial and seasonal variability of primary production on the Eastern Bering Sea shelf. *Deep Sea Research Part II: Topical Studies in Oceanography* 1–15. [PDF](/assets/docs/Lomas_2012_DSR.pdf){:target="_blank"}
5. Mackey, K., Buck, K.N., **Casey, J.R.**, Cid, A., Lomas, M.W., Sohrin, Y., Paytan, A., 2012. Phytoplankton responses to atmospheric metal deposition in the coastal and open-ocean Sargasso Sea. *Frontiers in Microbiology* 3, 1–15. [PDF](/assets/docs/Mackey_2012_FrontiersM.pdf){:target="_blank"}
6. **Casey, J.R.**, Aucan, J.P., Goldberg, S.R., Lomas, M.W., 2013. Changes in partitioning of carbon among photosynthetic pico- and nanoplankton in the Sargasso Sea in response to changes in the North Atlantic Oscillation. *Deep Sea Research II: Topical Studies in Oceanography* 93, 58-70. [PDF](/assets/docs/Casey_2013_DSR.pdf){:target="_blank"}
7. Wallhead, P.J., Garçon, V.C., **Casey, J.R.**, Lomas, M.W., 2014. Long-term variability of phytoplankton carbon biomass in the Sargasso Sea. *Global Biogeochemical Cycles* 28, 825-841. [PDF](/assets/docs/Wallhead_2014_GBC.pdf){:target="_blank"}
8. Durham, B.P., Grote, J., Whittaker, K.A., Bender, S.J., Luo, H., Grim, S.L., Brown, J.M., **Casey, J.R.**, Dron, A., Florez-Leiva, L., Krupke, A., Luria, C.M., Mine, A.H., Nigro, O.D., Pather, S., Talarmin, A., Wear, E.K., Weber, T.S., 4. Wilson, J.M., Church, M.J., DeLong, E.F., Karl, D.M., Steward, G.F., Eppley, J.M., Krypides, N.C., Schuster, S., Rappé, M.S., 2014. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. *Standards in Genomic Sciences* 9, 632. [PDF](/assets/docs/Durham_2014_SGS.pdf){:target="_blank"}
9. **Casey, J.R.**, Falkowski, P.G., Karl, D.M., 2015. Substrate selection for heterotrophic bacterial growth in the sea. *Marine Chemistry* 177, 349-356. [PDF](/assets/docs/Casey_2015_MarChe.pdf){:target="_blank"}
10. **Casey, J.R.**, Mardinoglu, A., Nielsen, J., Karl, D.M., 2016. Adaptive evolution of phosphorus metabolism in *Prochlorococcus*. *mSystems* 1, e00065–16. [PDF](/assets/docs/Casey_2016_mSystems.pdf){:target="_blank"}
11. Wilson, S.T., Aylward, F.O., Ribalet, F., Barone, B., **Casey, J.R.**, Connell, P.E., Eppley, J.A., Ferrón, S., Romano, A.E., Turk-Kubo, K.A., Vislova, A., Armbrust, V., Caron, D.A., Church, M.J., Zehr, J.P., Karl, D.M., DeLong, E.F., 2017. Coordinated regulation of growth, activity, and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium *Crocosphaera*. *Nature Microbiology* 2, 17118. [PDF](/assets/docs/Wilson_2017_NatMicro.pdf){:target="_blank"}
12. **Casey, J.R.**, Ferrón, S., Karl, D.M., 2017. Light-enhanced microbial organic carbon yield. *Frontiers in Microbiology* 8, 2157. [PDF](/assets/docs/Casey_2017_FrontiersM.pdf){:target="_blank"}
13. **Casey, J.R.**, Björkman, K.M., Ferrón, S., Karl, D.M., 2019. Size-dependence of metabolism within marine picoplankton populations. *Limnology and Oceanography* 64, 1819-1827. [PDF](/assets/docs/Casey_2019_LO.pdf){:target="_blank"}
14. Sosa, O.A., **Casey, J.R.**, Karl, D.M., 2019. Methylphosphonate oxidation in *Prochlorococcus* supports phosphate acquisition, formate secretion, and carbon assimilation into purine nucleotides. *Applied and Environmental Microbiology*, 85:e00289-19. [PDF](/assets/docs/Sosa_2019_AEM.pdf){:target="_blank"}
15. Wilson, S.T., Hawko, N.J., Armbrust, E.V., Barone, B., Björkman, K.M., Boysen, A.K., Burgos, M., Burrell, T.J., **Casey, J.R.**, DeLong, E.F., Dugenne, M., Dutkiewicz, S., Dyhrman, S.T., Ferrón, S., Follows, M.J., Foreman, R.K., Funkey, C.P., Harke, M.J., Henke, B.A., Hill, C.N., Hynes, A.M., Ingalls, A.E., Jahn, O., Kelly, R.L., Knapp, A.N., Letelier, R.M., Ribalet, F., Shimabukuro E.M., Tabata, R.K.S., Turk-Kubo, K.A., White, A.E., Zehr, J.P., John, S., Karl, D.M., 2019. Kilauea lava fuels phytoplankton bloom in the North Pacific Ocean. *Science* 365, 1040-1044. [PDF](/assets/docs/Wilson_2019_Science.pdf){:target="_blank"}
16. **Casey, J.R.**, Follows, M.J., 2020. A steady-state model of microbial acclimation to substrate limitation. *PLOS Computational Biology* 16:e1008140. [PDF](/assets/docs/CaseyFollows2020.pdf){:target="_blank"}
17. Beckett, S.J., Demory, D., Coenen, A.R., **Casey, J.R.**, Dugenne, M., Follett, C.L., Connell P., Carlson, M.C.G., Hu, S.K., Wilson, S.T., Muratore, D., Rodriguez-Gonzalez, R.A., Peng, S., Becker, K., Mende, D.R., Armbrust, E.V., Caron, D.A., Lindell, D., Follows, M.J., White, A.E., Ribalet, F., Weitz, J.S., 2021. Diel population dynamics and mortality of *Prochlorococcus* in the North Pacific Subtropical Gyre. *bioRxiv* doi:10.1101/2021.06.15.448546. [PDF](/assets/docs/Beckett_2021_bioRxiv.pdf){:target="_blank"}
18. Mattern, J.P., Glauninger, K., Britten, G.L., **Casey, J.R.**, Hyun, S., Wu, Z., Armbrust, E.V., Harchaoui, Z., Ribalet, F., 2022. A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series. *PLoS Computational Biology* 18:e1009733. [PDF](/assets/docs/Mattern_2022_PlosCompBio.pdf){:target="_blank"}
19. Muratore, D., Boysen, A.K., Harke, M.J., Becker, K.W., **Casey, J.R.**, Coesel, S.N., Mende, D.R., Wilson, S.T., Aylward, F.O., Eppley, J.M., Vislova, A., Peng, S., Rodriguez-Gonzalez, R. A., Beckett, S.J., Armbrust, E.V., DeLong, E.F., Karl, D.M., White, A.E., Zehr, J.P., Van Mooy, B.A.S., Dyhrman, S.T., Ingalls, A.E., Weitz, J.S., 2022. Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. *Nature Ecology and Evolution* doi:10.1038/s41559-021-01606-w. [PDF](/assets/docs/Muratore_2022_NatureEcoEvo.pdf){:target="_blank"}
20. **Casey, J.R.**, Boiteau, R.M., Engqvist, M.K.M., Finkel, Z.V., Li, G., Liefer, J., Muller, C.L., Munoz, N., Follows, M.J., 2022. Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology. *Science Advances* 8:eabl4930. [PDF](/assets/docs/Casey_2022_ScienceAdvances.pdf){:target="_blank"}
21. Smyth, T., Moffat, D., Tarran, G., Sathyendranath, S., Ribalet, F., **Casey, J.R.,** 2023. Determining drivers of phytoplankton carbon to chlorophyll ratio at Atlantic Basin scale. *Frontiers in Marine Science* 10:1191216. [PDF](/assets/docs/Smyth_2023_Frontiers.pdf){:target="_blank"}
22. Moore, L.R., Caspi, R., Campbell, D.A., **Casey, J.R.**, Crevecoeur, S., Lea-Smith, D.J., Long, B., Omar, N.M., Paley, S.M., Schmelling, N.M., Torrado, A., Zehr, J.P., Karp, P.D., 2024. CyanoCyc cyanobacterial web portal. *Frontiers in Microbiology* 15:1340413 [PDF](/assets/docs/Moore_2024_Frontiers.pdf){:target="_blank"}
23. Beckett, S.J., Demory, D., Coenen, A.R., **Casey, J.R.**, Dugenne, M., Follett, C.L., Connell, P., Carlson, M.C.G., Hu, S.K., Wilson, S.T., Muratore, D., Rodriguez-Gonzalez, R.A., Peng, S., Becker, K.W., Mende, D.R., Armbrust, E.V., Caron, D.A., Lindell, D., White, A.E., Ribalet, F., Weitz, J.S., 2024. Disentangling top-down drivers of mortality underlying diel population dynamics of *Prochlorococcus* in the North Pacific Subtropical Gyre. *Nature Communications* 15:2105 [PDF](/assets/docs/Beckett_2024_NatCom.pdf){:target="_blank"}
24. **Casey, J.R.**, Bennion, B.J., D'Haeseleer, P., Kimbrel, J.A., Marschmann, G.L., Navid, A., 2024. Transporter annotations are holding up progress in metabolic modeling. *Frontiers in Systems Biology* 4:1394084 [PDF](/assets/docs/Casey_2024_FrontierSysBio.pdf){:target="_blank"}
1. **Casey, J.R.**, Lomas, M.W., Mandecki, J., Walker, D.E., 2007. *Prochlorococcus* contributes to new production in the Sargasso Sea deep chlorophyll maximum. *Geophysical Research Letters* 34, L10604. [PDF](/assets/docs/Casey_2007_GRL.pdf){:target="_blank"} https://doi.org/10.1029/2006GL028725
2. **Casey, J.R.**, Lomas, M.W., Michelou, V.K., Dyhrman, S.T., Ammerman, J.W., Sylvan, J.B., 2009. Taxon-specific orthophosphate and ATP utilization in the western Sargasso Sea. *Aquatic Microbial Ecology* 58, 31-44. [PDF](/assets/docs/Casey_2009_AME.pdf){:target="_blank"} https://doi.org/10.3354/ame01348
3. Fawcett, S.E., Lomas, M.W., **Casey, J.R.**, Ward, B.B., Sigman, D.M., 2011. Assimilation of upwelled nitrate by small eukaryotes in the Sargasso Sea. *Nature Geoscience* 4, 1–6. [PDF](/assets/docs/Fawcett_2011_NatGeosci.pdf){:target="_blank"} https://doi.org/10.1038/NGEO1265
4. Lomas, M.W., Moran, S.B., **Casey, J.R.**, Bell, D.W., Tiahlo, M., Whitefield, J., Kelly, R.P., Mathis, J.T., Cokelet, E.D., 2012. Spatial and seasonal variability of primary production on the Eastern Bering Sea shelf. *Deep Sea Research Part II: Topical Studies in Oceanography* 1–15. [PDF](/assets/docs/Lomas_2012_DSR.pdf){:target="_blank"} https://doi.org/10.1016/j.dsr2.2012.02.010
5. Mackey, K., Buck, K.N., **Casey, J.R.**, Cid, A., Lomas, M.W., Sohrin, Y., Paytan, A., 2012. Phytoplankton responses to atmospheric metal deposition in the coastal and open-ocean Sargasso Sea. *Frontiers in Microbiology* 3, 1–15. [PDF](/assets/docs/Mackey_2012_FrontiersM.pdf){:target="_blank"} https://doi.org/10.3389/fmicb.2012.00359
6. **Casey, J.R.**, Aucan, J.P., Goldberg, S.R., Lomas, M.W., 2013. Changes in partitioning of carbon among photosynthetic pico- and nanoplankton in the Sargasso Sea in response to changes in the North Atlantic Oscillation. *Deep Sea Research II: Topical Studies in Oceanography* 93, 58-70. [PDF](/assets/docs/Casey_2013_DSR.pdf){:target="_blank"} https://doi.org/10.1016/j.dsr2.2013.02.002
7. Wallhead, P.J., Garçon, V.C., **Casey, J.R.**, Lomas, M.W., 2014. Long-term variability of phytoplankton carbon biomass in the Sargasso Sea. *Global Biogeochemical Cycles* 28, 825-841. [PDF](/assets/docs/Wallhead_2014_GBC.pdf){:target="_blank"} https://doi.org/10.1002/2013GB004797
8. Durham, B.P., Grote, J., Whittaker, K.A., Bender, S.J., Luo, H., Grim, S.L., Brown, J.M., **Casey, J.R.**, Dron, A., Florez-Leiva, L., Krupke, A., Luria, C.M., Mine, A.H., Nigro, O.D., Pather, S., Talarmin, A., Wear, E.K., Weber, T.S., 4. Wilson, J.M., Church, M.J., DeLong, E.F., Karl, D.M., Steward, G.F., Eppley, J.M., Krypides, N.C., Schuster, S., Rappé, M.S., 2014. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. *Standards in Genomic Sciences* 9, 632. [PDF](/assets/docs/Durham_2014_SGS.pdf){:target="_blank"} https://doi.org/10.4056/sig s.4998989
9. **Casey, J.R.**, Falkowski, P.G., Karl, D.M., 2015. Substrate selection for heterotrophic bacterial growth in the sea. *Marine Chemistry* 177, 349-356. [PDF](/assets/docs/Casey_2015_MarChe.pdf){:target="_blank"} https://doi.org/10.1016/j.marchem.2015.06.032
10. **Casey, J.R.**, Mardinoglu, A., Nielsen, J., Karl, D.M., 2016. Adaptive evolution of phosphorus metabolism in *Prochlorococcus*. *mSystems* 1, e00065–16. [PDF](/assets/docs/Casey_2016_mSystems.pdf){:target="_blank"} https://doi.org/10.1128/mSystems.00065-16
11. Wilson, S.T., Aylward, F.O., Ribalet, F., Barone, B., **Casey, J.R.**, Connell, P.E., Eppley, J.A., Ferrón, S., Romano, A.E., Turk-Kubo, K.A., Vislova, A., Armbrust, V., Caron, D.A., Church, M.J., Zehr, J.P., Karl, D.M., DeLong, E.F., 2017. Coordinated regulation of growth, activity, and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium *Crocosphaera*. *Nature Microbiology* 2, 17118. [PDF](/assets/docs/Wilson_2017_NatMicro.pdf){:target="_blank"} https://doi.org/10.1038/nmicrobiol.2017.11
12. **Casey, J.R.**, Ferrón, S., Karl, D.M., 2017. Light-enhanced microbial organic carbon yield. *Frontiers in Microbiology* 8, 2157. [PDF](/assets/docs/Casey_2017_FrontiersM.pdf){:target="_blank"} https://doi.org/10.3389/fmicb.2017.02157
13. **Casey, J.R.**, Björkman, K.M., Ferrón, S., Karl, D.M., 2019. Size-dependence of metabolism within marine picoplankton populations. *Limnology and Oceanography* 64, 1819-1827. [PDF](/assets/docs/Casey_2019_LO.pdf){:target="_blank"} https://doi.org/10.1002/lno.11153
14. Sosa, O.A., **Casey, J.R.**, Karl, D.M., 2019. Methylphosphonate oxidation in *Prochlorococcus* supports phosphate acquisition, formate secretion, and carbon assimilation into purine nucleotides. *Applied and Environmental Microbiology*, 85:e00289-19. [PDF](/assets/docs/Sosa_2019_AEM.pdf){:target="_blank"} https://doi.org/10.1128/AEM.00289-19
15. Wilson, S.T., Hawko, N.J., Armbrust, E.V., Barone, B., Björkman, K.M., Boysen, A.K., Burgos, M., Burrell, T.J., **Casey, J.R.**, DeLong, E.F., Dugenne, M., Dutkiewicz, S., Dyhrman, S.T., Ferrón, S., Follows, M.J., Foreman, R.K., Funkey, C.P., Harke, M.J., Henke, B.A., Hill, C.N., Hynes, A.M., Ingalls, A.E., Jahn, O., Kelly, R.L., Knapp, A.N., Letelier, R.M., Ribalet, F., Shimabukuro E.M., Tabata, R.K.S., Turk-Kubo, K.A., White, A.E., Zehr, J.P., John, S., Karl, D.M., 2019. Kilauea lava fuels phytoplankton bloom in the North Pacific Ocean. *Science* 365, 1040-1044. [PDF](/assets/docs/Wilson_2019_Science.pdf){:target="_blank"} https://doi.org/10.1126/science.aax4767
16. **Casey, J.R.**, Follows, M.J., 2020. A steady-state model of microbial acclimation to substrate limitation. *PLOS Computational Biology* 16:e1008140. [PDF](/assets/docs/CaseyFollows2020.pdf){:target="_blank"} https://doi.org/10.1371/journal.pcbi.1008140
17. Beckett, S.J., Demory, D., Coenen, A.R., **Casey, J.R.**, Dugenne, M., Follett, C.L., Connell P., Carlson, M.C.G., Hu, S.K., Wilson, S.T., Muratore, D., Rodriguez-Gonzalez, R.A., Peng, S., Becker, K., Mende, D.R., Armbrust, E.V., Caron, D.A., Lindell, D., Follows, M.J., White, A.E., Ribalet, F., Weitz, J.S., 2021. Diel population dynamics and mortality of *Prochlorococcus* in the North Pacific Subtropical Gyre. *bioRxiv* doi:10.1101/2021.06.15.448546. [PDF](/assets/docs/Beckett_2021_bioRxiv.pdf){:target="_blank"} https://doi.org/10.1101/2021.06.15.448546
18. Mattern, J.P., Glauninger, K., Britten, G.L., **Casey, J.R.**, Hyun, S., Wu, Z., Armbrust, E.V., Harchaoui, Z., Ribalet, F., 2022. A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series. *PLoS Computational Biology* 18:e1009733. [PDF](/assets/docs/Mattern_2022_PlosCompBio.pdf){:target="_blank"} https://doi.org/10.1371/journal.pcbi.1009733
19. Muratore, D., Boysen, A.K., Harke, M.J., Becker, K.W., **Casey, J.R.**, Coesel, S.N., Mende, D.R., Wilson, S.T., Aylward, F.O., Eppley, J.M., Vislova, A., Peng, S., Rodriguez-Gonzalez, R. A., Beckett, S.J., Armbrust, E.V., DeLong, E.F., Karl, D.M., White, A.E., Zehr, J.P., Van Mooy, B.A.S., Dyhrman, S.T., Ingalls, A.E., Weitz, J.S., 2022. Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. *Nature Ecology and Evolution* doi:10.1038/s41559-021-01606-w. [PDF](/assets/docs/Muratore_2022_NatureEcoEvo.pdf){:target="_blank"} https://doi.org/10.1038/s41559-021-01606-w
20. **Casey, J.R.**, Boiteau, R.M., Engqvist, M.K.M., Finkel, Z.V., Li, G., Liefer, J., Muller, C.L., Munoz, N., Follows, M.J., 2022. Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology. *Science Advances* 8:eabl4930. [PDF](/assets/docs/Casey_2022_ScienceAdvances.pdf){:target="_blank"} https://doi.org/10.1126/sciadv.abl4930
21. Smyth, T., Moffat, D., Tarran, G., Sathyendranath, S., Ribalet, F., **Casey, J.R.,** 2023. Determining drivers of phytoplankton carbon to chlorophyll ratio at Atlantic Basin scale. *Frontiers in Marine Science* 10:1191216. [PDF](/assets/docs/Smyth_2023_Frontiers.pdf){:target="_blank"} https://doi.org/10.3389/fmars.2023.1191216
22. Moore, L.R., Caspi, R., Campbell, D.A., **Casey, J.R.**, Crevecoeur, S., Lea-Smith, D.J., Long, B., Omar, N.M., Paley, S.M., Schmelling, N.M., Torrado, A., Zehr, J.P., Karp, P.D., 2024. CyanoCyc cyanobacterial web portal. *Frontiers in Microbiology* 15:1340413 [PDF](/assets/docs/Moore_2024_Frontiers.pdf){:target="_blank"} https://doi.org/10.3389/fmicb.2024.1340413
23. Beckett, S.J., Demory, D., Coenen, A.R., **Casey, J.R.**, Dugenne, M., Follett, C.L., Connell, P., Carlson, M.C.G., Hu, S.K., Wilson, S.T., Muratore, D., Rodriguez-Gonzalez, R.A., Peng, S., Becker, K.W., Mende, D.R., Armbrust, E.V., Caron, D.A., Lindell, D., White, A.E., Ribalet, F., Weitz, J.S., 2024. Disentangling top-down drivers of mortality underlying diel population dynamics of *Prochlorococcus* in the North Pacific Subtropical Gyre. *Nature Communications* 15:2105 [PDF](/assets/docs/Beckett_2024_NatCom.pdf){:target="_blank"} https://doi.org/10.1038/s41467-024-46165-3
24. **Casey, J.R.**, Bennion, B.J., D'Haeseleer, P., Kimbrel, J.A., Marschmann, G.L., Navid, A., 2024. Transporter annotations are holding up progress in metabolic modeling. *Frontiers in Systems Biology* 4:1394084 [PDF](/assets/docs/Casey_2024_FrontierSysBio.pdf){:target="_blank"} https://doi.org/10.3389/fsysb.2024.1394084

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