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protobuf: normalize how protobuf files are generated
The relative paths option for protoc generators doesn't work well when it comes to dependencies. This simplifies the code generation to avoid using `go generate` and to use one global command for protoc generation. This is similar to docker/buildx#2713 since the same problems with code generation occur here too. Signed-off-by: Jonathan A. Sternberg <jonathan.sternberg@docker.com>
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