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Adding more pre-processing filters for Mutect. #2

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merged 1 commit into from
May 30, 2015

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fnothaft
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Adds a few more pre-processing filters that @tdanford had been working on. I think we still need two more:

  • Read pair agreement filter
  • Mismatch quality score filter

@tdanford had some WIP code for that, but I think they need a bit more work, so I'll add them in a future PR.

jstjohn added a commit that referenced this pull request May 30, 2015
Adding more pre-processing filters for Mutect.
@jstjohn jstjohn merged commit 504c0a8 into jstjohn:mutect_work May 30, 2015
jstjohn pushed a commit that referenced this pull request Mar 10, 2016
Updating from bigdatagenomics/avocado
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3 participants