fix: explicitly assign t_r after clean_img in fMRIPrepConfoundRemover

juaml · Jan 22, 2025 · 76075e9 · 76075e9
1 parent fd8cfc2
commit 76075e9
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/junifer/preprocess/confounds/fmriprep_confound_remover.py b/junifer/preprocess/confounds/fmriprep_confound_remover.py
@@ -596,6 +596,8 @@ def preprocess(
             t_r=t_r,
             mask_img=mask_img,
         )
+        # Fix t_r as nilearn messes it up
+        cleaned_img.header["pixdim"][4] = t_r
         # Save deconfounded data
         deconfounded_img_path = element_tempdir / "deconfounded_data.nii.gz"
         nib.save(cleaned_img, deconfounded_img_path)