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[ENH]: Improve BasePreprocessor and fMRIPrepConfoundRemover #260

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merged 10 commits into from
Oct 18, 2023

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@synchon synchon commented Oct 17, 2023

  • description of feature/fix
  • tests added/passed
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This PR refactors internals of BasePreprocessor to make it easy for subclassing. It also adapts fMRIPrepConfoundRemover to base class changes.

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codecov bot commented Oct 17, 2023

Codecov Report

Merging #260 (407978c) into main (b0f3714) will decrease coverage by 0.02%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #260      +/-   ##
==========================================
- Coverage   92.83%   92.82%   -0.02%     
==========================================
  Files          86       86              
  Lines        3811     3790      -21     
  Branches      744      741       -3     
==========================================
- Hits         3538     3518      -20     
+ Misses        170      169       -1     
  Partials      103      103              
Flag Coverage Δ
docs 100.00% <ø> (ø)

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Files Coverage Δ
junifer/preprocess/base.py 84.61% <ø> (+0.17%) ⬆️
.../preprocess/confounds/fmriprep_confound_remover.py 98.70% <ø> (-0.12%) ⬇️

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github-actions bot commented Oct 17, 2023

PR Preview Action v1.4.4
🚀 Deployed preview to https://juaml.github.io/junifer/pr-preview/pr-260/
on branch gh-pages at 2023-10-18 09:41 UTC

@synchon synchon requested a review from fraimondo October 17, 2023 11:09
@synchon synchon enabled auto-merge October 17, 2023 13:11
@synchon synchon disabled auto-merge October 17, 2023 13:21
@synchon synchon force-pushed the update/preprocessor-base branch from 911aa51 to 407978c Compare October 18, 2023 09:36
@synchon synchon merged commit e0b09d2 into main Oct 18, 2023
24 checks passed
@synchon synchon deleted the update/preprocessor-base branch October 18, 2023 09:37
@synchon synchon added enhancement New feature or request preprocess Issues or pull requests related to preprocessors labels Oct 31, 2023
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