[ENH]: Introduce _AntsApplyTransformsWarper

[synchon]

• description of feature/fix
• tests added/passed
• add an entry for the latest changes

This PR introduces _AntsApplyTransformsWarper as a generic ANTs antsApplyTransforms wrapper class for internal use. It also adapts BOLDWarper, get_mask, get_parcellation and get_coordinates to dynamically choose FSL or ANTs depending on warp file extension. It also completes unit tests for _ApplyWarper and BOLDWarper.

[codecov]

Codecov Report

Attention: 108 lines in your changes are missing coverage. Please review.

Comparison is base (4f42f76) 89.46% compared to head (9c0b219) 88.09%.

❗ Current head 9c0b219 differs from pull request most recent head 150871a. Consider uploading reports for the commit 150871a to get more accurate results

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #293      +/-   ##
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- Coverage   89.46%   88.09%   -1.37%     
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  Files          98       99       +1     
  Lines        4405     4512     +107     
  Branches      847      865      +18     
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+ Hits         3941     3975      +34     
- Misses        323      396      +73     
  Partials      141      141              

Flag	Coverage Δ
docs	100.00% <ø> (ø)
junifer	88.09% <17.55%> (-1.37%)	⬇️

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Files	Coverage Δ
junifer/preprocess/fsl/apply_warper.py	38.46% <ø> (ø)
junifer/preprocess/bold_warper.py	54.83% <9.09%> (-17.89%)	⬇️
junifer/data/masks.py	75.49% <4.76%> (-7.47%)	⬇️
junifer/data/parcellations.py	86.27% <4.76%> (-2.32%)	⬇️
junifer/data/coordinates.py	56.09% <0.00%> (-14.68%)	⬇️
...er/preprocess/ants/ants_apply_transforms_warper.py	38.46% <38.46%> (ø)

... and 3 files with indirect coverage changes

[github-actions]

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2024-01-15 09:08 UTC